7JU1

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

• PDB DOI: https://doi.org/10.2210/pdb7JU1/pdb
• BMRB: 30788
• NAKB: 7JU1

• Classification: RNA
• Organism(s): Human immunodeficiency virus 1
• Mutation(s): No 


• Deposited: 2020-08-18 Released: 2020-10-07 
• Deposition Author(s): Shi, H., Rangadurai, A., Roy, R., Yesselman, J.D., Al-Hashimi, H.M.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction

Shi, H., Rangadurai, A., Abou-Assi, H., Roy, R., Case, D.A., Herschlag, D., Yesselman, J.D., Al-Hashimi, H.M.

(2020) Nat Commun 11: 5531

• DOI: https://doi.org/10.1038/s41467-020-19371-y

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 9.31 kDa 
• Atom Count: 614 
• Modelled Residue Count: 29 
• Deposited Residue Count: 29 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
RNA (29-MER)	A [auth X]	29	Human immunodeficiency virus 1

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-10-07 
Deposition Author(s): Shi, H., Rangadurai, A., Roy, R., Yesselman, J.D., Al-Hashimi, H.M.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1R01GM132899
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	U54 AI150470

Revision History  

• Version 1.0: 2020-10-07
  Type: Initial release
  
• Version 1.1: 2020-11-11
  Changes: Database references
• Version 1.2: 2023-06-14
  Changes: Database references, Other