7INS

STRUCTURE OF PORCINE INSULIN COCRYSTALLIZED WITH CLUPEINE Z

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Observed: 0.194 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Structure of porcine insulin cocrystallized with clupeine Z.

Balschmidt, P., Hansen, F.B., Dodson, E.J., Dodson, G.G., Korber, F.

(1991) Acta Crystallogr B 47: 975-986

  • DOI: 10.1107/s010876819100842x
  • Primary Citation of Related Structures:  
    7INS

  • PubMed Abstract: 

    • The crystal structure of NPH-insulin, pig insulin cocrystallized with zinc, m-cresol and protamine, has been solved by molecular replacement and refined using restrained least-squares refinement methods. The final crystallographic R factor for all reflections between 2 and 10 A is 19 ...

    The crystal structure of NPH-insulin, pig insulin cocrystallized with zinc, m-cresol and protamine, has been solved by molecular replacement and refined using restrained least-squares refinement methods. The final crystallographic R factor for all reflections between 2 and 10 A is 19.4%. The insulin molecules are arranged as hexamers with two tetrahedrally coordinated Zn atoms in the central channel and one m-cresol bound to each monomer near His B5. One protamine binding site has been unequivocally identified near a dimer-dimer interface, although most of the polypeptide is crystallographically disordered. The conformation of the insulin moiety and the structural differences between the three unique monomers have been analysed. The zinc and m-cresol environments are described and the nature of the protamine binding site is outlined.

    Related Citations: 
    • Phenol Stabilizes More Helix in a New Symmetrical Zinc Insulin Hexamer
      Derewenda, U., Derewenda, Z., Dodson, E.J., Dodson, G.G., Reynolds, C.D., Smith, G.D., Sparks, C., Swenson, D.
      (1989) Nature 338: 594
    • The Structure of 2Zn Pig Insulin Crystals at 1.5 Angstroms Resolution
      Baker, E.N., Blundell, T.L., Cutfield, J.F., Cutfield, S.M., Dodson, E.J., Dodson, G.G., Hodgkin, D.M.C., Hubbard, R.E., Isaacs, N.W., Reynolds, C.D., Sakabe, K., Sakabe, N., Vijayan, N.M.
      (1988) Philos Trans R Soc London,ser B 319: 369
    Organizational Affiliation: 

    Novo-Nordisk A/S, Gentofte, Denmark.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
INSULIN (CHAIN A)A, C, E21Sus scrofaMutation(s): 0 
Gene Names: INS
UniProt
Find proteins for P01315 (Sus scrofa)
Explore P01315 
Go to UniProtKB:  P01315
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01315
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
INSULIN (CHAIN B)B, D, F30Sus scrofaMutation(s): 0 
Gene Names: INS
UniProt
Find proteins for P01315 (Sus scrofa)
Explore P01315 
Go to UniProtKB:  P01315
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01315
Protein Feature View
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
GENERAL PROTAMINE CHAING16N/AMutation(s): 0 
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CRS
Query on CRS
Download Ideal Coordinates CCD File 
H [auth A],
I [auth C],
M [auth E]		M-CRESOL
C7 H8 O
RLSSMJSEOOYNOY-UHFFFAOYSA-N		 Ligand Interaction
UNK
Query on UNK
Download Ideal Coordinates CCD File 
K [auth D],
L [auth D]		UNKNOWN
C4 H9 N O2
QWCKQJZIFLGMSD-VKHMYHEASA-N		 Ligand Interaction
ZN
Query on ZN
Download Ideal Coordinates CCD File 
J [auth D]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Observed: 0.194 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.9α = 90
b = 62.9β = 90
c = 85.9γ = 90
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1994-01-31
    Type: Initial release
  • Version 1.1: 2007-11-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance