7G00

Crystal Structure of human FABP1 in complex with 2-[[3-(5-tert-butyl-1,2,4-oxadiazol-3-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid

PDB DOI: https://doi.org/10.2210/pdb7G00/pdb
Deposition Group: G_1002264 ExploreG_1002264

Classification: LIPID BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-04-27 Released: 2023-06-14
Deposition Author(s): Ehler, A., Benz, J., Obst, U., Neidhart, W., Rudolph, M.G.
Funding Organization(s): F. Hoffmann-La Roche LTD

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.243
R-Value Work: 0.207
R-Value Observed: 0.209

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of a human FABP1 complex

Obst, U., Magnone, C., Kuhn, B., Rudolph, M.G.

To be published.

Macromolecule Content

Total Structure Weight: 239.72 kDa
Atom Count: 16,781
Modelled Residue Count: 2,043
Deposited Residue Count: 2,080
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fatty acid-binding protein, liver	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	130	Homo sapiens	Mutation(s): 0 Gene Names: FABP1, FABPL
UniProt & NIH Common Fund Data Resources
Find proteins for P07148 (Homo sapiens) Explore P07148 Go to UniProtKB: P07148
PHAROS: P07148 GTEx: ENSG00000163586
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P07148
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
WII (Subject of Investigation/LOI) Query on WII Download Ideal Coordinates CCD File SDF format, chain BA [auth F] SDF format, chain CA [auth G] SDF format, chain EA [auth H] SDF format, chain GA [auth I] SDF format, chain IA [auth J] SDF format, chain LA [auth K] SDF format, chain MA [auth L] SDF format, chain OA [auth M] SDF format, chain Q [auth A] SDF format, chain RA [auth N] SDF format, chain S [auth B] SDF format, chain SA [auth O] SDF format, chain UA [auth P] SDF format, chain V [auth C] SDF format, chain W [auth D] SDF format, chain Y [auth E] MOL2 format, chain BA [auth F] MOL2 format, chain CA [auth G] MOL2 format, chain EA [auth H] MOL2 format, chain GA [auth I] MOL2 format, chain IA [auth J] MOL2 format, chain LA [auth K] MOL2 format, chain MA [auth L] MOL2 format, chain OA [auth M] MOL2 format, chain Q [auth A] MOL2 format, chain RA [auth N] MOL2 format, chain S [auth B] MOL2 format, chain SA [auth O] MOL2 format, chain UA [auth P] MOL2 format, chain V [auth C] MOL2 format, chain W [auth D] MOL2 format, chain Y [auth E]	BA [auth F] CA [auth G] EA [auth H] GA [auth I] IA [auth J] BA [auth F], CA [auth G], EA [auth H], GA [auth I], IA [auth J], LA [auth K], MA [auth L], OA [auth M], Q [auth A], RA [auth N], S [auth B], SA [auth O], UA [auth P], V [auth C], W [auth D], Y [auth E]	2-{[(3P)-3-(5-tert-butyl-1,2,4-oxadiazol-3-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl}cyclopent-1-ene-1-carboxylic acid C₂₁ H₂₅ N₃ O₄ S ZXVOGITXGGTCJD-UHFFFAOYSA-N		Interactions Focus chain BA [auth F] Focus chain CA [auth G] Focus chain EA [auth H] Focus chain GA [auth I] Focus chain IA [auth J] Focus chain LA [auth K] Focus chain MA [auth L] Focus chain OA [auth M] Focus chain Q [auth A] Focus chain RA [auth N] Focus chain S [auth B] Focus chain SA [auth O] Focus chain UA [auth P] Focus chain V [auth C] Focus chain W [auth D] Focus chain Y [auth E] Interactions & Density Focus chain BA [auth F] Focus chain CA [auth G] Focus chain EA [auth H] Focus chain GA [auth I] Focus chain IA [auth J] Focus chain LA [auth K] Focus chain MA [auth L] Focus chain OA [auth M] Focus chain Q [auth A] Focus chain RA [auth N] Focus chain S [auth B] Focus chain SA [auth O] Focus chain UA [auth P] Focus chain V [auth C] Focus chain W [auth D] Focus chain Y [auth E]
SCN Query on SCN Download Ideal Coordinates CCD File SDF format, chain AA [auth F] SDF format, chain DA [auth G] SDF format, chain FA [auth H] SDF format, chain HA [auth I] SDF format, chain JA [auth J] SDF format, chain KA [auth J] SDF format, chain NA [auth L] SDF format, chain PA [auth M] SDF format, chain QA [auth N] SDF format, chain R [auth A] SDF format, chain T [auth B] SDF format, chain TA [auth O] SDF format, chain U [auth B] SDF format, chain VA [auth P] SDF format, chain X [auth D] SDF format, chain Z [auth E] MOL2 format, chain AA [auth F] MOL2 format, chain DA [auth G] MOL2 format, chain FA [auth H] MOL2 format, chain HA [auth I] MOL2 format, chain JA [auth J] MOL2 format, chain KA [auth J] MOL2 format, chain NA [auth L] MOL2 format, chain PA [auth M] MOL2 format, chain QA [auth N] MOL2 format, chain R [auth A] MOL2 format, chain T [auth B] MOL2 format, chain TA [auth O] MOL2 format, chain U [auth B] MOL2 format, chain VA [auth P] MOL2 format, chain X [auth D] MOL2 format, chain Z [auth E]	AA [auth F] DA [auth G] FA [auth H] HA [auth I] JA [auth J] AA [auth F], DA [auth G], FA [auth H], HA [auth I], JA [auth J], KA [auth J], NA [auth L], PA [auth M], QA [auth N], R [auth A], T [auth B], TA [auth O], U [auth B], VA [auth P], X [auth D], Z [auth E]	THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M		Interactions Focus chain AA [auth F] Focus chain DA [auth G] Focus chain FA [auth H] Focus chain HA [auth I] Focus chain JA [auth J] Focus chain KA [auth J] Focus chain NA [auth L] Focus chain PA [auth M] Focus chain QA [auth N] Focus chain R [auth A] Focus chain T [auth B] Focus chain TA [auth O] Focus chain U [auth B] Focus chain VA [auth P] Focus chain X [auth D] Focus chain Z [auth E] Interactions & Density Focus chain AA [auth F] Focus chain DA [auth G] Focus chain FA [auth H] Focus chain HA [auth I] Focus chain JA [auth J] Focus chain KA [auth J] Focus chain NA [auth L] Focus chain PA [auth M] Focus chain QA [auth N] Focus chain R [auth A] Focus chain T [auth B] Focus chain TA [auth O] Focus chain U [auth B] Focus chain VA [auth P] Focus chain X [auth D] Focus chain Z [auth E]