7F7K | pdb_00007f7k

Crystal structure of AKR4C17 bound with NADP+

PDB DOI: https://doi.org/10.2210/pdb7F7K/pdb

Classification: OXIDOREDUCTASE
Organism(s): Echinochloa colona
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-06-30 Released: 2022-07-06
Deposition Author(s): Li, H., Yang, Y., Hu, Y., Chen, C.-C., Huang, J.-W., Min, J., Dai, L., Guo, R.-T.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.36 Å
R-Value Free:
0.227 (Depositor), 0.225 (DCC)
R-Value Work:
0.188 (Depositor), 0.190 (DCC)
R-Value Observed:
0.191 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Structural analysis and engineering of aldo-keto reductase from glyphosate-resistant Echinochloa colona

Li, H., Yang, Y., Hu, Y., Chen, C.C., Huang, J.W., Min, J., Dai, L., Guo, R.T.

(2022) J Hazard Mater 436: 129191

DOI: https://doi.org/10.1016/j.jhazmat.2022.129191

Macromolecule Content

Total Structure Weight: 72.62 kDa
Atom Count: 5,262
Modeled Residue Count: 619
Deposited Residue Count: 642
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AKR4-2	A, B	321	Echinochloa colona	Mutation(s): 0
UniProt
Find proteins for A0A5J6VLZ7 (Echinochloa colona) Explore A0A5J6VLZ7 Go to UniProtKB: A0A5J6VLZ7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A5J6VLZ7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAP (Subject of Investigation/LOI) Query on NAP Download:Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain C [auth A] MOL2 format, chain F [auth B] MOL2 format, chain C [auth A] mmCIF format, chain F [auth B] mmCIF format, chain C [auth A]	C [auth A], F [auth B]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₂₈ N₇ O₁₇ P₃ XJLXINKUBYWONI-NNYOXOHSSA-N		Interactions Focus chain C [auth A] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain F [auth B]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain I [auth B] SDF format, chain H [auth B] SDF format, chain G [auth B] SDF format, chain D [auth A] MOL2 format, chain I [auth B] MOL2 format, chain H [auth B] MOL2 format, chain G [auth B] MOL2 format, chain D [auth A] mmCIF format, chain I [auth B] mmCIF format, chain H [auth B] mmCIF format, chain G [auth B] mmCIF format, chain D [auth A]	D [auth A], G [auth B], H [auth B], I [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain D [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth B] Interactions & Density Focus chain D [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth B]
CO Query on CO Download:Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]