7F60

Crystal structure of auxiliary protein in complex with human nuclear protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.238 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for Sarbecovirus ORF6 mediated blockage of nucleocytoplasmic transport

Gao, X.Tian, H.Zhu, K.Li, Q.Hao, W.Wang, L.Qin, B.Deng, H.Cui, S.

(2022) Nat Commun 13: 4782


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
mRNA export factor
A, B
368Homo sapiensMutation(s): 0 
Gene Names: RAE1MRNP41
UniProt & NIH Common Fund Data Resources
Find proteins for P78406 (Homo sapiens)
Explore P78406 
Go to UniProtKB:  P78406
PHAROS:  P78406
GTEx:  ENSG00000101146 
Entity Groups  
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UniProt GroupP78406
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup98-Nup96
C, D
1,817Homo sapiensMutation(s): 0 
Gene Names: NUP98ADAR2
EC: 3.4.21
UniProt & NIH Common Fund Data Resources
Find proteins for P52948 (Homo sapiens)
Explore P52948 
Go to UniProtKB:  P52948
PHAROS:  P52948
GTEx:  ENSG00000110713 
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UniProt GroupP52948
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ORF6 protein
E, F
61Severe acute respiratory syndrome coronavirus 2Mutation(s): 0 
UniProt
Find proteins for P0DTC6 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTC6 
Go to UniProtKB:  P0DTC6
Entity Groups  
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UniProt GroupP0DTC6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.238 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 193.345α = 90
b = 87.531β = 93.68
c = 48.23γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHENIXmodel building

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-14
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description