7F52 | pdb_00007f52

Crystal Structure of IBV Nsp2

PDB DOI: https://doi.org/10.2210/pdb7F52/pdb

Classification: VIRAL PROTEIN
Organism(s): Infectious bronchitis virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-06-21 Released: 2021-07-21
Deposition Author(s): Ming, Z., Li, Y., Yan, L., Lou, Z., Rao, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.56 Å
R-Value Free:
0.260 (Depositor), 0.266 (DCC)
R-Value Work:
0.226 (Depositor), 0.240 (DCC)
R-Value Observed:
0.227 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7F52

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of IBV Nsp2

Ming, Z., Li, Y., Yan, L., Lou, Z., Rao, Z.

To be published.

Macromolecule Content

Total Structure Weight: 150.2 kDa
Atom Count: 9,717
Modeled Residue Count: 1,168
Deposited Residue Count: 1,346
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-structural protein 2	A, B	673	Infectious bronchitis virus	Mutation(s): 0
UniProt
Find proteins for P0C6Y3 (Avian infectious bronchitis virus (strain M41)) Explore P0C6Y3 Go to UniProtKB: P0C6Y3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0C6Y3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.56 Å
R-Value Free: 0.260 (Depositor), 0.266 (DCC)
R-Value Work: 0.226 (Depositor), 0.240 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.038	α = 90
b = 192.313	β = 90.81
c = 105.749	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
AutoSol	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-07-21

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81330036

Revision History (Full details and data files)

Version 1.0: 2021-07-21
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.