7F3H | pdb_00007f3h

Crystal structure of cytochrome P450DA heme domain

PDB DOI: https://doi.org/10.2210/pdb7F3H/pdb

Classification: OXIDOREDUCTASE
Organism(s): Deinococcus aerius
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-06-16 Released: 2021-07-28
Deposition Author(s): Wan, N.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.246 (Depositor), 0.247 (DCC)
R-Value Work:
0.200 (Depositor), 0.201 (DCC)
R-Value Observed:
0.201 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Directed evolution of cytochrome P450DA hydroxylase activity for stereoselective biohydroxylation

Wan, N.W., Cui, H.B., Zhao, L., Shan, J., Chen, K., Wang, Z.Q., Zhou, X.J., Cui, B.D., Han, W.Y., Chen, Y.Z.

(2022) Catal Sci Technol 12: 5703-5708

DOI: https://doi.org/10.1039/d2cy00164k

Macromolecule Content

Total Structure Weight: 230.6 kDa
Atom Count: 15,192
Modeled Residue Count: 1,830
Deposited Residue Count: 2,004
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bifunctional cytochrome P450/NADPH--P450 reductase	A, B, C, D	501	Deinococcus aerius	Mutation(s): 0 Gene Names: DAERI_140002 EC: 1.14.14.1 (PDB Primary Data), 1.6.2.4 (PDB Primary Data)
UniProt
Find proteins for A0A2I9DQ46 (Deinococcus aerius) Explore A0A2I9DQ46 Go to UniProtKB: A0A2I9DQ46
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2I9DQ46
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEM (Subject of Investigation/LOI) Query on HEM Download:Ideal Coordinates CCD File SDF format, chain K [auth D] SDF format, chain J [auth C] SDF format, chain I [auth B] SDF format, chain E [auth A] MOL2 format, chain K [auth D] MOL2 format, chain J [auth C] MOL2 format, chain I [auth B] MOL2 format, chain E [auth A] mmCIF format, chain K [auth D] mmCIF format, chain J [auth C] mmCIF format, chain I [auth B] mmCIF format, chain E [auth A]	E [auth A], I [auth B], J [auth C], K [auth D]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain E [auth A] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth D] Interactions & Density Focus chain E [auth A] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth D]
SER Query on SER Download:Ideal Coordinates CCD File SDF format, chain H [auth B] MOL2 format, chain H [auth B] mmCIF format, chain H [auth B]	H [auth B]	SERINE C₃ H₇ N O₃ MTCFGRXMJLQNBG-REOHCLBHSA-N		Interactions Focus chain H [auth B] Interactions & Density Focus chain H [auth B]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain L [auth D] SDF format, chain G [auth A] SDF format, chain F [auth A] MOL2 format, chain L [auth D] MOL2 format, chain G [auth A] MOL2 format, chain F [auth A] mmCIF format, chain L [auth D] mmCIF format, chain G [auth A] mmCIF format, chain F [auth A]	F [auth A], G [auth A], L [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain L [auth D] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain L [auth D]