7F18 | pdb_00007f18

Crystal Structure of a mutant of acid phosphatase from Pseudomonas aeruginosa (Q57H/W58P/D135R)

PDB DOI: https://doi.org/10.2210/pdb7F18/pdb

Classification: HYDROLASE
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2021-06-08 Released: 2021-10-27
Deposition Author(s): Xu, X., Hou, X.D., Song, W., Yin, D.J., Rao, Y.J., Liu, L.M.
Funding Organization(s): National Basic Research Program of China (973 Program)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free:
0.274 (Depositor), 0.269 (DCC)
R-Value Work:
0.191 (Depositor)
R-Value Observed:
0.195 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Local Electric Field Modulated Reactivity of Pseudomonas aeruginosa Acid Phosphatase for Enhancing Phosphorylation of l-Ascorbic Acid

Xu, X., Yan, S., Hou, X., Song, W., Wang, L., Wu, T., Qi, M., Wu, J., Rao, Y., Wang, B., Liu, L.

(2021) ACS Catal 11: 13397-13407

DOI: https://doi.org/10.1021/acscatal.1c04200

Macromolecule Content

Total Structure Weight: 70.68 kDa
Atom Count: 4,869
Modeled Residue Count: 635
Deposited Residue Count: 651
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acid phosphatase	A, B, C	217	Pseudomonas aeruginosa	Mutation(s): 3 Gene Names: phoC, C0044_01345, CAZ10_16160, DT376_10070, DZ962_30070, IPC116_25940, IPC1295_25655, IPC1323_25265, IPC1481_23795, IPC1505_26850... phoC, C0044_01345, CAZ10_16160, DT376_10070, DZ962_30070, IPC116_25940, IPC1295_25655, IPC1323_25265, IPC1481_23795, IPC1505_26850, IPC1509_05755, IPC36_01875, IPC582_09790, IPC620_15205, IPC669_21580, NCTC13621_04764, RW109_RW109_00792 EC: 3.1.3.2
UniProt
Find proteins for A0A0D6FFE3 (Pseudomonas aeruginosa) Explore A0A0D6FFE3 Go to UniProtKB: A0A0D6FFE3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0D6FFE3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free: 0.274 (Depositor), 0.269 (DCC)
R-Value Work: 0.191 (Depositor)
R-Value Observed: 0.195 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.822	α = 90
b = 119.587	β = 90
c = 190.059	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SAINT	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-10-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Basic Research Program of China (973 Program)	China	21878126

Revision History (Full details and data files)

Version 1.0: 2021-10-27
Type: Initial release
Version 1.1: 2022-05-11
Changes: Database references
Version 1.2: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.