7EWL

cryo-EM structure of apo GPR158


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.52 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the class C orphan GPCR GPR158 in complex with RGS7-G beta 5.

Jeong, E.Kim, Y.Jeong, J.Cho, Y.

(2021) Nat Commun 12: 6805-6805

  • DOI: https://doi.org/10.1038/s41467-021-27147-1
  • Primary Citation of Related Structures:  
    7EWL, 7EWP, 7EWR

  • PubMed Abstract: 

    GPR158, a class C orphan GPCR, functions in cognition, stress-induced mood control, and synaptic development. Among class C GPCRs, GPR158 is unique as it lacks a Venus flytrap-fold ligand-binding domain and terminates Gαi/o protein signaling through the RGS7-Gβ5 heterodimer. Here, we report the cryo-EM structures of GPR158 alone and in complex with one or two RGS7-Gβ5 heterodimers. GPR158 dimerizes through Per-Arnt-Sim-fold extracellular and transmembrane (TM) domains connected by an epidermal growth factor-like linker. The TM domain (TMD) reflects both inactive and active states of other class C GPCRs: a compact intracellular TMD, conformations of the two intracellular loops (ICLs) and the TMD interface formed by TM4/5. The ICL2, ICL3, TM3, and first helix of the cytoplasmic coiled-coil provide a platform for the DHEX domain of one RGS7 and the second helix recruits another RGS7. The unique features of the RGS7-binding site underlie the selectivity of GPR158 for RGS7.


  • Organizational Affiliation

    Department of Life Science, Pohang University of Science and Technology, Pohang, Republic of Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable G-protein coupled receptor 158
A, B
687Homo sapiensMutation(s): 0 
Gene Names: GPR158
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T848 (Homo sapiens)
Explore Q5T848 
Go to UniProtKB:  Q5T848
PHAROS:  Q5T848
GTEx:  ENSG00000151025 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5T848
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.52 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2021R1A2C301335711
National Research Foundation (NRF, Korea)Korea, Republic Of2017M3A9F6029736
National Research Foundation (NRF, Korea)Korea, Republic Of2021R1A6A1A10042944

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-01
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references