7EVA | pdb_00007eva

Structure of molecular chaperone SycE of Yersinia enterocolitica

PDB DOI: https://doi.org/10.2210/pdb7EVA/pdb

Classification: CHAPERONE
Organism(s): Yersinia enterocolitica
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-05-21 Released: 2022-05-25
Deposition Author(s): Kumar, R., Datta, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.08 Å
R-Value Free:
0.234 (Depositor), 0.230 (DCC)
R-Value Work:
0.200 (Depositor), 0.200 (DCC)
R-Value Observed:
0.201 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of molecular chaperone SycE of Yersinia enterocolitica

Kumar, R., Datta, S.

To be published.

Macromolecule Content

Total Structure Weight: 16.91 kDa
Atom Count: 1,011
Modeled Residue Count: 117
Deposited Residue Count: 151
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
YopE regulator	A [auth C]	151	Yersinia enterocolitica	Mutation(s): 0 Gene Names: sycE, yerA, ERS008652_03695, NCTC10938_04290
UniProt
Find proteins for P31490 (Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)) Explore P31490 Go to UniProtKB: P31490
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P31490
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.08 Å
R-Value Free: 0.234 (Depositor), 0.230 (DCC)
R-Value Work: 0.200 (Depositor), 0.200 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58	α = 90
b = 58	β = 90
c = 77	γ = 90

Software Package:

Software Name	Purpose
PROTEUM PLUS	data collection
PROTEUM PLUS	data scaling
PDB_EXTRACT	data extraction
PROTEUM PLUS	data reduction
PHENIX	refinement
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2022-05-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-05-25
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.