7EQX

Crystal structure of an Aedes aegypti procarboxypeptidase B1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.168 
  • R-Value Observed: 0.169 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of Aedes aegypti procarboxypeptidase B1 and its binding with Dengue virus for controlling infection.

Gavor, E.Choong, Y.K.Tulsian, N.K.Nayak, D.Idris, F.Sivaraman, H.Ting, D.H.R.Sylvie, A.Mok, Y.K.Kini, R.M.Sivaraman, J.

(2022) Life Sci Alliance 5

  • DOI: https://doi.org/10.26508/lsa.202101211
  • Primary Citation of Related Structures:  
    7EQX

  • PubMed Abstract: 

    Metallocarboxypeptidases play critical roles in the development of mosquitoes and influence pathogen/parasite infection of the mosquito midgut. Here, we report the crystal structure of Aedes aegypti procarboxypeptidase B1 (PCPBAe1), characterized its substrate specificity and mechanism of binding to and inhibiting Dengue virus (DENV). We show that the activated PCPBAe1 (CPBAe1) hydrolyzes both Arg- and Lys-substrates, which is modulated by residues Asp 251 and Ser 239 Notably, these residues are conserved in CPBs across mosquito species, possibly required for efficient digestion of basic dietary residues that are necessary for mosquito reproduction and development. Importantly, we characterized the interaction between PCPBAe1 and DENV envelope (E) protein, virus-like particles, and infectious virions. We identified residues Asp 18A , Glu 19A , Glu 85 , Arg 87 , and Arg 89 of PCPBAe1 are essential for interaction with DENV. PCPBAe1 maps to the dimeric interface of the E protein domains I/II (Lys 64 -Glu 84 , Val 238 -Val 252 , and Leu 278 -Leu 287 ). Overall, our studies provide general insights into how the substrate-binding property of mosquito carboxypeptidases could be targeted to potentially control mosquito populations or proposes a mechanism by which PCPBAe1 binds to and inhibits DENV.


  • Organizational Affiliation

    Department of Biological Sciences, National University of Singapore, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Carboxypeptidase B
A, B
98Aedes aegyptiMutation(s): 0 
Gene Names: CPB-I
EC: 3.4.17.2
UniProt
Find proteins for A0A1S4F020 (Aedes aegypti)
Explore A0A1S4F020 
Go to UniProtKB:  A0A1S4F020
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1S4F020
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Carboxypeptidase B
C, D
299Aedes aegyptiMutation(s): 0 
Gene Names: CPB-I
EC: 3.4.17.2
UniProt
Find proteins for A0A1S4F020 (Aedes aegypti)
Explore A0A1S4F020 
Go to UniProtKB:  A0A1S4F020
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1S4F020
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.168 
  • R-Value Observed: 0.169 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 139.797α = 90
b = 74.436β = 119.08
c = 83.108γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-10
    Type: Initial release
  • Version 1.1: 2022-05-25
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description