7EQG

Structure of Csy-AcrIF5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

AcrIF5 specifically targets DNA-bound CRISPR-Cas surveillance complex for inhibition.

Xie, Y.Zhang, L.Gao, Z.Yin, P.Wang, H.Li, H.Chen, Z.Zhang, Y.Yang, M.Feng, Y.

(2022) Nat Chem Biol 18: 670-677

  • DOI: https://doi.org/10.1038/s41589-022-00995-8
  • Primary Citation of Related Structures:  
    7EQG, 7F45

  • PubMed Abstract: 

    CRISPR-Cas systems are prokaryotic antiviral systems, and phages use anti-CRISPR proteins (Acrs) to inactivate these systems. Here we present structural and functional analyses of AcrIF5, exploring its unique anti-CRISPR mechanism. AcrIF5 shows binding specificity only for the target DNA-bound form of the crRNA-guided surveillance (Csy) complex, but not the apo Csy complex from the type I-F CRISPR-Cas system. We solved the structure of the Csy-dsDNA-AcrIF5 complex, revealing that the conformational changes of the Csy complex caused by dsDNA binding dictate the binding specificity for the Csy-dsDNA complex by AcrIF5. Mechanistically, five AcrIF5 molecules bind one Csy-dsDNA complex, which destabilizes the helical bundle domain of Cas8f, thus preventing subsequent Cas2/3 recruitment. AcrIF5 exists in symbiosis with AcrIF3, which blocks Cas2/3 recruitment. This attack on the recruitment event stands in contrast to the conventional mechanisms of blocking binding of target DNA. Overall, our study reveals an unprecedented mechanism of CRISPR-Cas inhibition by AcrIF5.


  • Organizational Affiliation

    Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing Key Laboratory of Bioprocess, State Key Laboratory of Chemical Resource Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR type I-F/YPEST-associated protein Csy2A [auth C]327Pseudomonas aeruginosaMutation(s): 0 
Gene Names: csy2ALP65_00953EQH76_13810NCTC13437_01526PACL_0128
UniProt
Find proteins for Q02MM0 (Pseudomonas aeruginosa (strain UCBPP-PA14))
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UniProt GroupQ02MM0
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated protein Csy3342Pseudomonas aeruginosaMutation(s): 0 
Gene Names: IPC1505_30680IPC36_28835
UniProt
Find proteins for Q02MM1 (Pseudomonas aeruginosa (strain UCBPP-PA14))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
AcrIF5H [auth J],
I [auth K],
M [auth P],
N [auth Q],
O [auth R]
79Pseudomonas aeruginosaMutation(s): 0 
Gene Names: IPC1164_31450
UniProt
Find proteins for L7P7V3 (Pseudomonas phage JBD5)
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UniProt GroupL7P7V3
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
type I-F CRISPR-associated endoribonuclease Cas6/Csy4J [auth L]187Pseudomonas aeruginosaMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Type I-F CRISPR-associated protein Csy1P [auth B]434Pseudomonas aeruginosaMutation(s): 0 
Gene Names: csy1ALP65_00954IPC1505_30690
UniProt
Find proteins for A0A3A8DDU9 (Pseudomonas aeruginosa)
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UniProt GroupA0A3A8DDU9
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Entity ID: 5
MoleculeChains LengthOrganismImage
RNA (60-MER)K [auth M]60Pseudomonas aeruginosa
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Entity ID: 6
MoleculeChains LengthOrganismImage
DNA (54-MER)L [auth N]54Pseudomonas aeruginosa
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Entity ID: 8
MoleculeChains LengthOrganismImage
DNA (54-MER)Q [auth O]54Pseudomonas aeruginosa
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China31822012

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-09
    Type: Initial release
  • Version 1.1: 2022-03-30
    Changes: Database references
  • Version 1.2: 2022-06-08
    Changes: Database references