7ECQ | pdb_00007ecq

Crystal structure of FAM3A

PDB DOI: https://doi.org/10.2210/pdb7ECQ/pdb

Classification: CYTOKINE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-03-13 Released: 2022-04-27
Deposition Author(s): Chang, Z., Shi, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.38 Å
R-Value Free:
0.171 (Depositor), 0.170 (DCC)
R-Value Work:
0.163 (Depositor), 0.160 (DCC)
R-Value Observed:
0.164 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

High Resolution Crystal Structure of FAM3A shed lights on its function on beta-oxidation

Chang, Z., Shi, C.

To be published.

Macromolecule Content

Total Structure Weight: 19.74 kDa
Atom Count: 1,643
Modeled Residue Count: 175
Deposited Residue Count: 175
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein FAM3A	A	175	Mus musculus	Mutation(s): 0 Gene Names: Fam3a
UniProt
Find proteins for Q9D8T0 (Mus musculus) Explore Q9D8T0 Go to UniProtKB: Q9D8T0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9D8T0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
J0R (Subject of Investigation/LOI) Query on J0R Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	[(2R)-1-(trimethyl-$l^4-azanyl)propan-2-yl] ethanoate C₈ H₁₈ N O₂ TXPWCDJHFBRHES-SSDOTTSWSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.38 Å
R-Value Free: 0.171 (Depositor), 0.170 (DCC)
R-Value Work: 0.163 (Depositor), 0.160 (DCC)
R-Value Observed: 0.164 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.186	α = 90
b = 60.782	β = 90
c = 78.907	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
Adxv	data reduction
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2022-04-27

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-04-27
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description
Version 1.2: 2024-10-16
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.