7EAV | pdb_00007eav

The X-ray crystallographic structure of glycogen debranching enzyme from Sulfolobus solfataricus STB09

PDB DOI: https://doi.org/10.2210/pdb7EAV/pdb

Classification: HYDROLASE
Organism(s): Saccharolobus solfataricus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-03-08 Released: 2022-03-09
Deposition Author(s): Li, Z.F., Ban, X.F., Tian, Y.X., Li, C.M., Cheng, L., Hong, Y., Gu, Z.B.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.325 (Depositor), 0.327 (DCC)
R-Value Work:
0.264 (Depositor), 0.272 (DCC)
R-Value Observed:
0.267 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

The X-ray Crystallographic Structure of Debranching Enzyme from Sulfolobus solfataricus STB09

Li, Z.F., Ban, X.F., Tian, Y.X., Li, C.M., Gu, Z.B.

To be published.

Macromolecule Content

Total Structure Weight: 166.36 kDa
Atom Count: 11,872
Modeled Residue Count: 1,429
Deposited Residue Count: 1,436
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycogen debranching enzyme	A, B	718	Saccharolobus solfataricus	Mutation(s): 0 Gene Names: orf c06021, glgX, SSOP1_2225, SULA_2828, SULB_2829, SULC_2826, SULG_14405, SULH_14405, SULI_14405, SULM_14335... orf c06021, glgX, SSOP1_2225, SULA_2828, SULB_2829, SULC_2826, SULG_14405, SULH_14405, SULI_14405, SULM_14335, SULN_14325, SULO_14345, SULZ_14425
UniProt
Find proteins for P95868 (Saccharolobus solfataricus) Explore P95868 Go to UniProtKB: P95868
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P95868
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.325 (Depositor), 0.327 (DCC)
R-Value Work: 0.264 (Depositor), 0.272 (DCC)
R-Value Observed: 0.267 (Depositor)

Space Group: P 3 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 203.543	α = 90
b = 203.543	β = 90
c = 89.466	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-03-09

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31722040
National Natural Science Foundation of China (NSFC)	China	31771935
National Natural Science Foundation of China (NSFC)	China	31901628

Revision History (Full details and data files)

Version 1.0: 2022-03-09
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description
Version 1.2: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.