7DPZ

Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM structures reveal the molecular basis of receptor-initiated coxsackievirus uncoating.

Xu, L.Zheng, Q.Zhu, R.Yin, Z.Yu, H.Lin, Y.Wu, Y.He, M.Huang, Y.Jiang, Y.Sun, H.Zha, Z.Yang, H.Huang, Q.Zhang, D.Chen, Z.Ye, X.Han, J.Yang, L.Liu, C.Que, Y.Fang, M.Gu, Y.Zhang, J.Luo, W.Zhou, Z.H.Li, S.Cheng, T.Xia, N.

(2021) Cell Host Microbe 29: 448-462.e5

  • DOI: https://doi.org/10.1016/j.chom.2021.01.001
  • Primary Citation of Related Structures:  
    7DPF, 7DPG, 7DPZ, 7DQ1, 7DQ4, 7DQ7

  • PubMed Abstract: 

    Enterovirus uncoating receptors bind at the surface depression ("canyon") that encircles each capsid vertex causing the release of a host-derived lipid called "pocket factor" that is buried in a hydrophobic pocket formed by the major viral capsid protein, VP1. Coxsackievirus and adenovirus receptor (CAR) is a universal uncoating receptor of group B coxsackieviruses (CVB). Here, we present five high-resolution cryoEM structures of CVB representing different stages of virus infection. Structural comparisons show that the CAR penetrates deeper into the canyon than other uncoating receptors, leading to a cascade of events: collapse of the VP1 hydrophobic pocket, high-efficiency release of the pocket factor and viral uncoating and genome release under neutral pH, as compared with low pH. Furthermore, we identified a potent therapeutic antibody that can neutralize viral infection by interfering with virion-CAR interactions, destabilizing the capsid and inducing virion disruption. Together, these results define the structural basis of CVB cell entry and antibody neutralization.


  • Organizational Affiliation

    State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Life Sciences, School of Public Health, Xiamen University, Xiamen 361102, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Virion protein 1A [auth 1]278Coxsackievirus B1Mutation(s): 1 
UniProt
Find proteins for A0A7T7KAA0 (Coxsackievirus B1)
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Go to UniProtKB:  A0A7T7KAA0
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UniProt GroupA0A7T7KAA0
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
VP2B [auth 2]263Coxsackievirus B1Mutation(s): 0 
UniProt
Find proteins for A0A2S0RQC2 (Coxsackievirus B1)
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Go to UniProtKB:  A0A2S0RQC2
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UniProt GroupA0A2S0RQC2
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
VP3C [auth 3]238Coxsackievirus B1Mutation(s): 0 
UniProt
Find proteins for L7UV52 (Coxsackievirus B1)
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Go to UniProtKB:  L7UV52
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UniProt GroupL7UV52
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP4D [auth 4]69Coxsackievirus B1Mutation(s): 1 
UniProt
Find proteins for A0A7T7KB31 (Coxsackievirus B1)
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UniProt GroupA0A7T7KB31
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Coxsackievirus and adenovirus receptorE [auth K]121Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P78310 (Homo sapiens)
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Go to UniProtKB:  P78310
PHAROS:  P78310
GTEx:  ENSG00000154639 
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UniProt GroupP78310
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-05
    Type: Initial release