7D08

Acinetobacter MlaFEDB complex in ATP-bound Vtrans1 conformation

PDB DOI: https://doi.org/10.2210/pdb7D08/pdb
EM Map EMD-30526: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Acinetobacter baumannii
Expression System: Escherichia coli K-12
Mutation(s): No
Membrane Protein: Yes OPMPDBTMMemProtMD

Deposited: 2020-09-09 Released: 2020-12-16
Deposition Author(s): Zhang, Y.Y., Fan, Q.X., Chi, X.M., Zhou, Q., Li, Y.Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structures of Acinetobacter baumannii glycerophospholipid transporter.

Zhang, Y., Fan, Q., Chi, X., Zhou, Q., Li, Y.

(2020) Cell Discov 6: 86-86

PubMed: 33298869 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-020-00230-5
Primary Citation of Related Structures:
7D06, 7D08, 7D09, 7D0A

Macromolecule Content

Total Structure Weight: 281.66 kDa
Atom Count: 17,802
Modelled Residue Count: 2,374
Deposited Residue Count: 2,600
Unique protein chains: 4

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Intermembrane phospholipid transport system permease protein MlaE	A, D	258	Acinetobacter baumannii	Mutation(s): 0 Gene Names: mlaE, ttg2B, A7M90_14775, AB945B12_01857, Aba9201_15665, ABCAM1_3325, ABKPCSM17A_01359, ABR2091_3298, ACX61_02030, APC21_19590... mlaE, ttg2B, A7M90_14775, AB945B12_01857, Aba9201_15665, ABCAM1_3325, ABKPCSM17A_01359, ABR2091_3298, ACX61_02030, APC21_19590, APD31_17515, AUO97_04515, B9X95_19830, C2U32_12245, CPI82_03200, E1A86_17005, E1A87_07935, EA706_02625, EA722_02115, EGM95_02165, EKS29_03575, EWO96_10890, F4T85_12835, FGL68_08045, FJU42_03310, FR761_17360, G3N53_10430, GSE42_18090, H0529_18335, H1058_16495, HB367_15490, HBK86_16035, HIN86_01960, ITE13_05885, SAMEA104305340_01243, SAMEA104305385_01589, SI89_04040 Membrane Entity: Yes
UniProt
Find proteins for V5V9F4 (Acinetobacter baumannii) Explore V5V9F4 Go to UniProtKB: V5V9F4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	V5V9F4
Protein Feature View Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ABC transporter ATP-binding protein	B, E	273	Acinetobacter baumannii	Mutation(s): 0 Gene Names: ttg2A, mlaF, A7M90_14770, Aba9201_15660, ABR2091_3299, APC21_19595, AUO97_04520, AYR68_16100, B7L45_02325, BAA1790NC_0387... ttg2A, mlaF, A7M90_14770, Aba9201_15660, ABR2091_3299, APC21_19595, AUO97_04520, AYR68_16100, B7L45_02325, BAA1790NC_0387, BS065_01955, CBE85_06065, CBL15_01900, CPI82_03205, CSB70_3297, CTZ19_01935, D8O08_003310, DLI71_13815, DLI72_03295, DOL94_03235, E1A86_17010, E1A87_07930, E2532_10325, E2533_15205, E2534_09955, E2535_18195, E2536_07460, E2538_09010, E2539_07825, E2540_10200, E2541_13130, EA720_012615, EGM95_02160, EWO96_10895, FDN00_18460, FE003_01950, FJU36_10010, FJU76_08855, G3N53_10435, GSE42_18095, H0529_18330, H1058_16500, HIN86_01955, IAG11_07270, IMO23_16130, ITE13_05880, NCTC13305_02842, SAMEA104305318_02181, SAMEA104305340_01244, SAMEA104305385_01588, SI89_04045
UniProt
Find proteins for A0A086HZU3 (Acinetobacter baumannii) Explore A0A086HZU3 Go to UniProtKB: A0A086HZU3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A086HZU3
Protein Feature View Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Anti-sigma factor antagonist	C, F	103	Acinetobacter baumannii	Mutation(s): 0 Gene Names: mlaB, ttg2E, A7M90_14790, AB945B12_01854, Aba9201_15680, ABCAM1_3322, ABKPCSM17A_01362, ABR2091_3295, ABUW_0387, ACX61_02045... mlaB, ttg2E, A7M90_14790, AB945B12_01854, Aba9201_15680, ABCAM1_3322, ABKPCSM17A_01362, ABR2091_3295, ABUW_0387, ACX61_02045, APC21_19575, APD31_17530, AUO97_04500, AYR68_16080, B7L45_02345, B9X95_19845, BAA1790NC_0391, BS065_01975, C2U32_12230, C6N18_17970, CBE85_06045, CBL15_01920, CPI82_03185, CSB70_3293, CTZ19_01955, D8O08_003330, DLI71_13835, DLI72_03275, DOL94_03255, DVA69_09315, E1A87_07950, E2532_10305, E2533_15225, E2534_09975, E2535_18175, E2536_07480, E2538_08990, E2539_07805, E2540_10220, E2541_13150, EA686_18495, EA706_02640, EA720_012635, EA722_02130, EGM95_02180, EKS29_03590, EWO96_10875, F2P40_01390, F4T85_12820, FDN00_18440, FE003_01970, FGL68_08030, FJU36_09990, FJU42_03325, FJU76_08875, FR761_17345, G3N53_10415, GNY86_20590, GSE42_18075, H0529_18350, H1058_16480, HB367_15505, HBK86_16020, HIN86_01975, IAG11_07250, IMO23_16110, ITE13_05900, NCTC13305_02846, NCTC13421_00393, SAMEA104305340_01240, SAMEA104305385_01592, SI89_04025
UniProt
Find proteins for V5V9K5 (Acinetobacter baumannii) Explore V5V9K5 Go to UniProtKB: V5V9K5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	V5V9K5
Protein Feature View Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
MCE family protein	G, H, I, J, K G, H, I, J, K, L	222	Acinetobacter baumannii	Mutation(s): 0 Gene Names: ttg2C, mlaD, A7M90_14780, AB945B12_01856, Aba9201_15670, ABCAM1_3324, ABKPCSM17A_01360, ABR2091_3297, ABUW_0385, ACX61_02035... ttg2C, mlaD, A7M90_14780, AB945B12_01856, Aba9201_15670, ABCAM1_3324, ABKPCSM17A_01360, ABR2091_3297, ABUW_0385, ACX61_02035, APC21_19585, APD31_17520, AUO97_04510, AYR68_16090, B7L45_02335, B9X95_19835, BAA1790NC_0389, BS065_01965, C2U32_12240, CBE85_06055, CBL15_01910, CPI82_03195, CSB70_3295, CTZ19_01945, D8O08_003320, DLI71_13825, DLI72_03285, DOL94_03245, DVA69_09305, E1A86_17000, E1A87_07940, E2532_10315, E2533_15215, E2534_09965, E2535_18185, E2536_07470, E2538_09000, E2539_07815, E2540_10210, E2541_13140, EA706_02630, EA720_012625, EA722_02120, EGM95_02170, EKS29_03580, EWO96_10885, F2P40_01380, F4T85_12830, FDN00_18450, FE003_01960, FGL68_08040, FJU36_10000, FJU76_08865, FR761_17355, G3N53_10425, GNY86_20580, GSE42_18085, H0529_18340, H1058_16490, HB367_15495, HBK86_16030, HIN86_01965, IAG11_07260, IMO23_16120, ITE13_05890, NCTC13305_02844, NCTC13421_00391, SAMEA104305318_02183, SAMEA104305340_01242, SAMEA104305385_01590, SI89_04035 Membrane Entity: Yes
UniProt
Find proteins for V5V921 (Acinetobacter baumannii) Explore V5V921 Go to UniProtKB: V5V921
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	V5V921
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download Ideal Coordinates CCD File SDF format, chain M [auth B] SDF format, chain N [auth E] MOL2 format, chain M [auth B] MOL2 format, chain N [auth E]	M [auth B], N [auth E]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Ligand Interaction