Download MendeleyCrystal structure of human Schlafen 5 N'-terminal domain (SLFN5-N) involved in ssRNA cleaving and DNA binding
Yang, J.Y., Luo, M., Ou, J.Y., Wang, Z.W., Gao, S.To be published.
7CUX
Crystal structure of human Schlafen 5 N'-terminal domain (SLFN5-N) involved in ssRNA cleaving and DNA binding
- PDB DOI: https://doi.org/10.2210/pdb7CUX/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2020-08-25 Released: 2021-08-25
- Funding Organization(s): National Natural Science Foundation of China (NSFC), Chinese Academy of Sciences
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.29 Å
- R-Value Free: 0.247
- R-Value Work: 0.201
- R-Value Observed: 0.204
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Schlafen family member 5 | 326 | Homo sapiens | Mutation(s): 0 Gene Names: SLFN5 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q08AF3 (Homo sapiens) Explore Q08AF3 Go to UniProtKB: Q08AF3 | |||||
PHAROS: Q08AF3 GTEx: ENSG00000166750 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q08AF3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | G [auth A] H [auth B] I [auth C] J [auth D] K [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.29 Å
- R-Value Free: 0.247
- R-Value Work: 0.201
- R-Value Observed: 0.204
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 211.86 | α = 90 |
| b = 156.442 | β = 110.382 |
| c = 131.459 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| REFMAC | refinement |
| XDS | data reduction |
| STARANISO | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-08-25 Deposition Author(s): Yang, J.Y., Luo, M., Ou, J.Y., Wang, Z.W., Gao, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 81772977 |
| National Natural Science Foundation of China (NSFC) | China | 81902841 |
| Chinese Academy of Sciences | China | 2018M640852 |
Revision History (Full details and data files)
- Version 1.0: 2021-08-25
Type: Initial release - Version 1.1: 2023-11-29
Changes: Data collection, Refinement description
