7CTG

Human Origin Recognition Complex, ORC1-5 State I


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insight into the assembly and conformational activation of human origin recognition complex.

Cheng, J.Li, N.Wang, X.Hu, J.Zhai, Y.Gao, N.

(2020) Cell Discov 6: 88-88

  • DOI: https://doi.org/10.1038/s41421-020-00232-3
  • Primary Citation of Related Structures:  
    7CTE, 7CTF, 7CTG

  • PubMed Abstract: 

    The function of the origin recognition complex (ORC) in DNA replication is highly conserved in recognizing and marking the initiation sites. The detailed molecular mechanisms by which human ORC is reconfigured into a state competent for origin association remain largely unknown. Here, we present structural characterizations of human ORC1-5 and ORC2-5 assemblies. ORC2-5 exhibits a tightly autoinhibited conformation with the winged-helix domain of ORC2 completely blocking the central DNA-binding channel. The binding of ORC1 partially relieves the autoinhibitory effect of ORC2-5 through remodeling ORC2-WHD, which makes ORC2-WHD away from the central channel creating a still autoinhibited but more dynamic structure. In particular, the AAA+ domain of ORC1 is highly flexible to sample a variety of conformations from inactive to potentially active states. These results provide insights into the detailed mechanisms regulating the autoinhibition of human ORC and its subsequent activation for DNA binding.


  • Organizational Affiliation

    State Key Laboratory of Membrane Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 1861Homo sapiensMutation(s): 0 
Gene Names: ORC1ORC1LPARC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13415 (Homo sapiens)
Explore Q13415 
Go to UniProtKB:  Q13415
PHAROS:  Q13415
GTEx:  ENSG00000085840 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13415
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 2577Homo sapiensMutation(s): 0 
Gene Names: ORC2ORC2L
UniProt & NIH Common Fund Data Resources
Find proteins for Q13416 (Homo sapiens)
Explore Q13416 
Go to UniProtKB:  Q13416
PHAROS:  Q13416
GTEx:  ENSG00000115942 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13416
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 3711Homo sapiensMutation(s): 0 
Gene Names: ORC3LATHEOORC3L
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBD5 (Homo sapiens)
Explore Q9UBD5 
Go to UniProtKB:  Q9UBD5
PHAROS:  Q9UBD5
GTEx:  ENSG00000135336 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UBD5
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 4436Homo sapiensMutation(s): 0 
Gene Names: ORC4ORC4L
UniProt & NIH Common Fund Data Resources
Find proteins for O43929 (Homo sapiens)
Explore O43929 
Go to UniProtKB:  O43929
PHAROS:  O43929
GTEx:  ENSG00000115947 
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UniProt GroupO43929
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 5435Homo sapiensMutation(s): 0 
Gene Names: ORC5ORC5L
UniProt & NIH Common Fund Data Resources
Find proteins for O43913 (Homo sapiens)
Explore O43913 
Go to UniProtKB:  O43913
PHAROS:  O43913
GTEx:  ENSG00000164815 
Entity Groups  
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UniProt GroupO43913
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2019YFA0508904

Revision History  (Full details and data files)

  • Version 1.0: 2021-01-06
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references