7CT1 | pdb_00007ct1

Crystal structure of Snx27 FERM domain in complex with a DLF motif

PDB DOI: https://doi.org/10.2210/pdb7CT1/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens, synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-08-17 Released: 2021-08-25
Deposition Author(s): Hu, W., Da, J., Sun, Q.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.222 (Depositor), 0.251 (DCC)
R-Value Work:
0.172 (Depositor)
R-Value Observed:
0.174 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7CT1

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Snx27 FERM domain in complex with a DLF motif

Hu, W., Jia, D., Sun, Q.

To be published.

Macromolecule Content

Total Structure Weight: 33.56 kDa
Atom Count: 2,354
Modeled Residue Count: 263
Deposited Residue Count: 286
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusion protein Sorting nexin-27 and DLF motif	A	286	Homo sapiens, synthetic construct This entity is chimeric	Mutation(s): 0 Gene Names: SNX27, KIAA0488, My014
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L92 (Homo sapiens) Explore Q96L92 Go to UniProtKB: Q96L92
PHAROS: Q96L92 GTEx: ENSG00000143376
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q96L92
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.222 (Depositor), 0.251 (DCC)
R-Value Work: 0.172 (Depositor)
R-Value Observed: 0.174 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.194	α = 90
b = 72.941	β = 90
c = 103.999	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-3000	data reduction
AutoSol	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-08-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-08-25
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.