7CNL

Crystal structure of TEAD3 in complex with VT105


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.224 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Small Molecule Inhibitors of TEAD Auto-palmitoylation Selectively Inhibit Proliferation and Tumor Growth of NF2 -deficient Mesothelioma.

Tang, T.T.Konradi, A.W.Feng, Y.Peng, X.Ma, M.Li, J.Yu, F.X.Guan, K.L.Post, L.

(2021) Mol Cancer Ther 20: 986-998

  • DOI: https://doi.org/10.1158/1535-7163.MCT-20-0717
  • Primary Citation of Related Structures:  
    7CNL

  • PubMed Abstract: 

    Mutations in the neurofibromatosis type 2 ( NF2 ) gene that limit or abrogate expression of functional Merlin are common in malignant mesothelioma. Merlin activates the Hippo pathway to suppress nuclear translocation of YAP and TAZ, the major effectors of the pathway that associate with the TEAD transcription factors in the nucleus and promote expression of genes involved in cell proliferation and survival. In this article, we describe the discovery of compounds that selectively inhibit YAP/TAZ-TEAD promoted gene transcription, block TEAD auto-palmitoylation, and disrupt interaction between YAP/TAZ and TEAD. Optimization led to potent analogs with excellent oral bioavailability and pharmacokinetics that selectively inhibit NF2 -deficient mesothelioma cell proliferation in vitro and growth of subcutaneous tumor xenografts in vivo These highly potent and selective TEAD inhibitors provide a way to target the Hippo-YAP pathway, which thus far has been undruggable and is dysregulated frequently in malignant mesothelioma and in other YAP-driven cancers and diseases.


  • Organizational Affiliation

    Vivace Therapeutics, Inc., San Mateo, California. ttang@vivacetherapeutics.com.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-5
A, B, C, D
221Homo sapiensMutation(s): 0 
Gene Names: TEAD3TEAD5TEF5
UniProt & NIH Common Fund Data Resources
Find proteins for Q99594 (Homo sapiens)
Explore Q99594 
Go to UniProtKB:  Q99594
PHAROS:  Q99594
GTEx:  ENSG00000007866 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99594
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
G9C (Subject of Investigation/LOI)
Query on G9C

Download Ideal Coordinates CCD File 
J [auth B],
R [auth D]
N-[(1S)-1-pyridin-2-ylethyl]-8-[4-(trifluoromethyl)phenyl]quinoline-3-carboxamide
C24 H18 F3 N3 O
FUKXXBXVSANFJK-HNNXBMFYSA-N
G9O
Query on G9O

Download Ideal Coordinates CCD File 
E [auth A],
O [auth C]
N-oxidanyltetradecanamide
C14 H29 N O2
XHKBEIYZVFBVAM-UHFFFAOYSA-N
TRS
Query on TRS

Download Ideal Coordinates CCD File 
P [auth C]2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
PO4
Query on PO4

Download Ideal Coordinates CCD File 
F [auth A]
G [auth A]
K [auth B]
L [auth B]
Q [auth C]
F [auth A],
G [auth A],
K [auth B],
L [auth B],
Q [auth C],
S [auth D],
T [auth D],
U [auth D]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
CL
Query on CL

Download Ideal Coordinates CCD File 
H [auth A],
I [auth A],
M [auth B],
N [auth B]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.224 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 150.808α = 90
b = 65.372β = 90
c = 123.016γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-28
    Type: Initial release
  • Version 1.1: 2021-06-16
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Database references, Derived calculations, Refinement description