7CML | pdb_00007cml

The Crystal Structure of human JNK2 from Biortus.

• PDB DOI: https://doi.org/10.2210/pdb7CML/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2020-07-28 Released: 2020-08-12 
• Deposition Author(s): Wang, F., Lin, D., Cheng, W., Miao, Q., Huang, Y., Shang, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 
  0.327 (Depositor), 0.333 (DCC) 
• R-Value Work: 
  0.284 (Depositor), 0.293 (DCC) 

Starting Model: experimental

Literature

The Crystal Structure of human JNK2 from Biortus.

Wang, F., Lin, D., Cheng, W., Miao, Q., Huang, Y., Shang, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 87.82 kDa 
• Atom Count: 5,601 
• Modeled Residue Count: 669 
• Deposited Residue Count: 762 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitogen-activated protein kinase 9	A, B	381	Homo sapiens	Mutation(s): 8  Gene Names: MAPK9, JNK2, PRKM9, SAPK1A EC: 2.7.11.24
UniProt & NIH Common Fund Data Resources
Find proteins for P45984 (Homo sapiens) Explore P45984  Go to UniProtKB:  P45984
PHAROS:  P45984 GTEx:  ENSG00000050748

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free:  0.327 (Depositor), 0.333 (DCC) 
• R-Value Work:  0.284 (Depositor), 0.293 (DCC) 

Space Group: P 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.004	α = 90
b = 102.004	β = 90
c = 70.088	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-08-12 
Deposition Author(s): Wang, F., Lin, D., Cheng, W., Miao, Q., Huang, Y., Shang, H.

Revision History  

• Version 1.0: 2020-08-12
  Type: Initial release
  
• Version 1.1: 2022-02-09
  Changes: Database references, Structure summary
• Version 1.2: 2023-11-29
  Changes: Data collection, Derived calculations, Refinement description