7CHX

acylphosphatase from Staphylococcus aureus

• PDB DOI: https://doi.org/10.2210/pdb7CHX/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Staphylococcus aureus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-07-06 Released: 2021-07-14 
• Deposition Author(s): Lee, K.-Y., Kim, D.-G., Lee, B.-J.
• Funding Organization(s): National Research Foundation (NRF, Korea)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.49 Å
• R-Value Free: 0.240 
• R-Value Work: 0.201 
• R-Value Observed: 0.203 

Literature

acylphosphatase from Staphylococcus aureus

Lee, K.-Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: homology

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 24.41 kDa 
• Atom Count: 1,588 
• Modelled Residue Count: 182 
• Deposited Residue Count: 210 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acylphosphatase	A, B	105	Staphylococcus aureus	Mutation(s): 0  Gene Names:  acyP, yccX, BN1321_260044, BTN44_05560, DDL17_12795, DQV20_10240, DQV53_07555, E4U00_04725, EP54_14800, EQ90_12880, ERS072840_02314, FA040_08725, FVP29_18130, GIX97_03140, GO677_08310, GO706_12140, GO746_10695, GO793_05135, GO803_14910, GO805_11030, GO810_04440, GO894_09605, GO941_00230, HMPREF3211_00435, M1K003_0247, NCTC10654_01455, NCTC10702_02217, NCTC5664_03214, NCTC6133_01806, NCTC7878_01640, NCTC9944_01419, RK64_07545, SAMEA1469856_01199, SAMEA1469884_02272, SAMEA1531680_02336, SAMEA1531701_02465, SAMEA2080329_01054, SAMEA2080330_01500, SAMEA2080334_01727, SAMEA2080433_01274, SAST44_01480, SAST45_01515 EC: 3.6.1.7
UniProt
Find proteins for Q2FYM9 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FYM9  Go to UniProtKB:  Q2FYM9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.49 Å
• R-Value Free: 0.240 
• R-Value Work: 0.201 
• R-Value Observed: 0.203 
• Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.124	α = 90
b = 77.124	β = 90
c = 35.319	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
REFMAC	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-07-14 
Deposition Author(s): Lee, K.-Y., Kim, D.-G., Lee, B.-J.

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Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2018R1A2A1A19018526
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2018R1A5A2024425
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2016R1C1B2014609
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2019R1H1A1102102

Revision History  

• Version 1.0: 2021-07-14
  Type: Initial release
  
• Version 1.1: 2024-03-27
  Changes: Data collection, Database references