7BUH | pdb_00007buh

Reduced ferredoxin of carbazole 1,9a-dioxygenase

• PDB DOI: https://doi.org/10.2210/pdb7BUH/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Metapseudomonas resinovorans
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2020-04-06 Released: 2021-04-07 
• Deposition Author(s): Matsuzawa, J., Wang, Y.X., Suzuki-Minakuchi, C., Nojiri, H.
• Funding Organization(s): Noda Institute for Scientific Research

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.79 Å
• R-Value Free: 
  0.201 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.157 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.159 (Depositor) 

Starting Model: experimental

Literature

Reduced ferredoxin of carbazole 1,9a-dioxygenase

Matsuzawa, J., Wang, Y.X., Suzuki-Minakuchi, C., Nojiri, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 12.71 kDa 
• Atom Count: 979 
• Modeled Residue Count: 113 
• Deposited Residue Count: 115 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferredoxin CarAc	A	115	Metapseudomonas resinovorans	Mutation(s): 0  Gene Names: carAc
UniProt
Find proteins for Q8GI16 (Metapseudomonas resinovorans) Explore Q8GI16  Go to UniProtKB:  Q8GI16

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FES (Subject of Investigation/LOI)	B [auth A]	FE2/S2 (INORGANIC) CLUSTER Fe2 S2 NIXDOXVAJZFRNF-UHFFFAOYSA-N
EDO	D [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
NA	C [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.79 Å
• R-Value Free:  0.201 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.157 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.159 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.045	α = 90
b = 67.725	β = 90
c = 45.45	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-04-07 
Deposition Author(s): Matsuzawa, J., Wang, Y.X., Suzuki-Minakuchi, C., Nojiri, H.

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Funding Organization	Location	Grant Number
Noda Institute for Scientific Research	Japan	--

Revision History  

• Version 1.0: 2021-04-07
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Refinement description