7BRI

Atrial Natriuretic Peptide Receptor complexed with Dendroaspis Natriuretic Peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural insight into hormone-recognition and transmembrane signaling by the atrial natriuretic peptide receptor

Ogawa, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Atrial natriuretic peptide receptor 1A, B435Rattus norvegicusMutation(s): 0 
Gene Names: Npr1
EC: 4.6.1.2
UniProt
Find proteins for P18910 (Rattus norvegicus)
Explore P18910 
Go to UniProtKB:  P18910
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Natriuretic peptide DNPC [auth L]38Dendroaspis angusticepsMutation(s): 0 
UniProt
Find proteins for P28374 (Dendroaspis angusticeps)
Explore P28374 
Go to UniProtKB:  P28374
Protein Feature View
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 3
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseD [auth C], F [auth E]3N-Glycosylation Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G62182OO
GlyCosmos:  G62182OO
GlyGen:  G62182OO
Entity ID: 4
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseE [auth D], G [auth F]4N-Glycosylation Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G48068RF
GlyCosmos:  G48068RF
GlyGen:  G48068RF
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL (Subject of Investigation/LOI)
Query on CL

Download Ideal Coordinates CCD File 
H [auth A], I [auth B]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 99.597α = 90
b = 99.597β = 90
c = 262.467γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data

  • Deposited Date: 2020-03-29 
  • Released Date: 2021-03-31 
  • Deposition Author(s): Ogawa, H.

Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)JapanJP22570110
Japan Agency for Medical Research and Development (AMED)JapanJP17am0101080, JP18am0101080 and JP19am0101080

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release