7BN2

Clathrin heavy chain N-terminal domain bound to Non structured protein 3 from Eastern Equine Encephalitis Virus

• PDB DOI: https://doi.org/10.2210/pdb7BN2/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens, Eastern equine encephalitis virus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-01-21 Released: 2022-03-02 
• Deposition Author(s): Badgujar, D.C., Dobritzsch, D.
• Funding Organization(s): The Swedish Foundation for Strategic Research, Swedish Research Council

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.97 Å
• R-Value Free: 0.219 
• R-Value Work: 0.181 

Literature

Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs

Mihalic, F., Simonetti, L., Giudice, G., Sander, M.R., Lindqvist, R., Peters, M.B.A., Benz, C., Kassa, E., Badgujar, D., Inturi, R., Ali, M., Krystkowiak, I., Sayadi, A., Andersson, E., Aronsson, H., Soderberg, O., Dobritzsch, D., Petsalaki, E., Overby, A.K., Jemth, P., Davey, N.E., Ivarsson, Y.

(2023) Nat Commun 14

• DOI: https://doi.org/10.1038/s41467-023-38015-5

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 85.13 kDa 
• Atom Count: 6,323 
• Modelled Residue Count: 737 
• Deposited Residue Count: 762 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Clathrin heavy chain 1	A [auth AAA], B [auth BBB]	364	Homo sapiens	Mutation(s): 0  Gene Names: CLTC, CLH17, CLTCL2, KIAA0034
UniProt & NIH Common Fund Data Resources
Find proteins for Q00610 (Homo sapiens) Explore Q00610  Go to UniProtKB:  Q00610
PHAROS:  Q00610 GTEx:  ENSG00000141367

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Non structured protein 3 from Eastern Equine Encephalitis Virus	C [auth CCC], D [auth DDD]	17	Eastern equine encephalitis virus	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	E [auth AAA]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
PO4	F [auth BBB]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.97 Å
• R-Value Free: 0.219 
• R-Value Work: 0.181 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 136.9	α = 90
b = 129.119	β = 115.294
c = 77.881	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-03-02 
Deposition Author(s): Badgujar, D.C., Dobritzsch, D.

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Funding Organization	Location	Grant Number
The Swedish Foundation for Strategic Research	Sweden	SB16-0039
Swedish Research Council	Sweden	2016-04965
Swedish Research Council	Sweden	2016-04134

Revision History  

• Version 1.0: 2022-03-02
  Type: Initial release
  
• Version 1.1: 2023-05-10
  Changes: Database references, Derived calculations
• Version 1.2: 2024-02-07
  Changes: Data collection, Refinement description