7BJS

Crystal structure of Khc/atypical Tm1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.231 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Molecular basis of mRNA transport by a kinesin-1-atypical tropomyosin complex.

Dimitrova-Paternoga, L.Jagtap, P.K.A.Cyrklaff, A.Lapouge, K.Sehr, P.Perez, K.Heber, S.Low, C.Hennig, J.Ephrussi, A.

(2021) Genes Dev 35: 976-991

  • DOI: https://doi.org/10.1101/gad.348443.121
  • Primary Citation of Related Structures:  
    7BJG, 7BJN, 7BJS

  • PubMed Abstract: 

    Kinesin-1 carries cargos including proteins, RNAs, vesicles, and pathogens over long distances within cells. The mechanochemical cycle of kinesins is well described, but how they establish cargo specificity is not fully understood. Transport of oskar mRNA to the posterior pole of the Drosophila oocyte is mediated by Drosophila kinesin-1, also called kinesin heavy chain (Khc), and a putative cargo adaptor, the atypical tropomyosin, a Tm1. How the proteins cooperate in mRNA transport is unknown. Here, we present the high-resolution crystal structure of a Khc- a Tm1 complex. The proteins form a tripartite coiled coil comprising two in-register Khc chains and one a Tm1 chain, in antiparallel orientation. We show that a Tm1 binds to an evolutionarily conserved cargo binding site on Khc, and mutational analysis confirms the importance of this interaction for mRNA transport in vivo. Furthermore, we demonstrate that Khc binds RNA directly and that it does so via its alternative cargo binding domain, which forms a positively charged joint surface with a Tm1, as well as through its adjacent auxiliary microtubule binding domain. Finally, we show that a Tm1 plays a stabilizing role in the interaction of Khc with RNA, which distinguishes a Tm1 from classical motor adaptors.


  • Organizational Affiliation

    Developmental Biology Unit, European Molecular Biology Laboratory (EMBL) Heidelberg, 69117 Heidelberg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Kinesin heavy chain
A, B
89Drosophila melanogasterMutation(s): 0 
Gene Names: KhckinCG7765
UniProt
Find proteins for P17210 (Drosophila melanogaster)
Explore P17210 
Go to UniProtKB:  P17210
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17210
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
SD21996p85Drosophila melanogasterMutation(s): 0 
Gene Names: 
UniProt
Find proteins for Q8IGY1 (Drosophila melanogaster)
Explore Q8IGY1 
Go to UniProtKB:  Q8IGY1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IGY1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.231 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 28.77α = 90
b = 33.49β = 94.58
c = 126γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
Arcimboldophasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySPP 1935

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-26
    Type: Initial release
  • Version 1.1: 2021-06-30
    Changes: Database references
  • Version 1.2: 2021-07-14
    Changes: Database references
  • Version 1.3: 2024-05-01
    Changes: Data collection, Database references, Refinement description