7BGF

CRYSTAL STRUCTURE OF THE N-TERMINAL DIMERIC COILED COIL OF THE HUMAN CTIP PROTEIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.224 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for the coiled-coil architecture of human CtIP.

Morton, C.R.Rzechorzek, N.J.Maman, J.D.Kuramochi, M.Sekiguchi, H.Rambo, R.Sasaki, Y.C.Davies, O.R.Pellegrini, L.

(2021) Open Biol 11: 210060-210060

  • DOI: https://doi.org/10.1098/rsob.210060
  • Primary Citation of Related Structures:  
    7BGF

  • PubMed Abstract: 

    The DNA repair factor CtIP has a critical function in double-strand break (DSB) repair by homologous recombination, promoting the assembly of the repair apparatus at DNA ends and participating in DNA-end resection. However, the molecular mechanisms of CtIP function in DSB repair remain unclear. Here, we present an atomic model for the three-dimensional architecture of human CtIP, derived from a multi-disciplinary approach that includes X-ray crystallography, small-angle X-ray scattering (SAXS) and diffracted X-ray tracking (DXT). Our data show that CtIP adopts an extended dimer-of-dimers structure, in agreement with a role in bridging distant sites on chromosomal DNA during the recombinational repair. The zinc-binding motif in the CtIP N-terminus alters dynamically the coiled-coil structure, with functional implications for the long-range interactions of CtIP with DNA. Our results provide a structural basis for the three-dimensional arrangement of chains in the CtIP tetramer, a key aspect of CtIP function in DNA DSB repair.


  • Organizational Affiliation

    Department of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA endonuclease RBBP8,CtIP/RBBP8
A, B
127Homo sapiensMutation(s): 2 
Gene Names: RBBP8CTIP
EC: 3.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q99708 (Homo sapiens)
Explore Q99708 
Go to UniProtKB:  Q99708
PHAROS:  Q99708
GTEx:  ENSG00000101773 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99708
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.224 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 86.598α = 90
b = 86.598β = 90
c = 42.601γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom104641/Z/14/Z

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-30
    Type: Initial release