7B96 | pdb_00007b96

NHL domain of human TRIM2

• PDB DOI: https://doi.org/10.2210/pdb7B96/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2020-12-14 Released: 2022-01-12 
• Deposition Author(s): Williams, F.P., Hennig, J., Foot, J., Murciano, B.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.219 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.177 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.178 (Depositor) 

Starting Model: experimental

Literature

NHL domain of human TRIM2

Williams, F.P., Hennig, J., Foot, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 60.24 kDa 
• Atom Count: 4,633 
• Modeled Residue Count: 560 
• Deposited Residue Count: 560 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 2 of Tripartite motif-containing protein 2	A, B	280	Homo sapiens	Mutation(s): 0  Gene Names: TRIM2, KIAA0517, RNF86 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q9C040 (Homo sapiens) Explore Q9C040  Go to UniProtKB:  Q9C040
PHAROS:  Q9C040 GTEx:  ENSG00000109654

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.219 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.177 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.178 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.18	α = 90
b = 83.2	β = 90
c = 132.76	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
PHASER	phasing
Coot	model building
XSCALE	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-01-12 
Deposition Author(s): Williams, F.P., Hennig, J., Foot, J., Murciano, B.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	SPP1935

Revision History  

• Version 1.0: 2022-01-12
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description