Macromolecule Content

Total Structure Weight: 3,128.54 kDa
Atom Count: 211,144
Modelled Residue Count: 17,541
Deposited Residue Count: 17,637
Unique protein chains: 75
Unique nucleic acid chains: 6

7B7D

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

PDB DOI: https://doi.org/10.2210/pdb7B7D/pdb
EM Map EMD-12081: EMDB EMDataResource

Classification: TRANSLATION
Organism(s): Saccharomyces cerevisiae S288C
Mutation(s): No

Deposited: 2020-12-10 Released: 2021-03-10
Deposition Author(s): Ranjan, N., Pochopien, A.A., Wu, C.C., Beckert, B., Blanchet, S., Green, R., Rodnina, M.V., Wilson, D.N.
Funding Organization(s): German Research Foundation (DFG), H2020 Marie Curie Actions of the European Commission, Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

eEF3 promotes late stages of tRNA translocation including E-tRNA release from the ribosome

Ranjan, N., Pochopien, A.A., Wu, C.C., Beckert, B., Blanchet, S., Green, R., Rodnina, M.V., Wilson, D.N.

To be published.

Macromolecules

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S0-A	C [auth P]	206	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS0A, NAB1, NAB1A, YST1, YGR214W
UniProt
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32905 Go to UniProtKB: P32905
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UniProt Group	P32905
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S1-A	D [auth Q]	232	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS1A, PLC1, RPS10A, YLR441C, L9753.9
UniProt
Find proteins for P33442 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P33442 Go to UniProtKB: P33442
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UniProt Group	P33442
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15	E	117	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS15, RPS21, YOL040C
UniProt
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q01855 Go to UniProtKB: Q01855
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UniProt Group	Q01855
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	F [auth R]	216	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS2, RPS4, SUP38, SUP44, YGL123W, G2893
UniProt
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25443 Go to UniProtKB: P25443
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UniProt Group	P25443
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3	G [auth A]	222	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS3, SUF14, YNL178W, N1653
UniProt
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05750 Go to UniProtKB: P05750
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UniProt Group	P05750
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4-A	H [auth S]	258	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS4A, RPS7B, YJR145C, J2186
UniProt
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX35 Go to UniProtKB: P0CX35
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UniProt Group	P0CX35
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	I [auth B]	206	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS5, RPS2, YJR123W, J2045
UniProt
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26783 Go to UniProtKB: P26783
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UniProt Group	P26783
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6-A	J [auth T]	228	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS6A, RPS101, RPS10B, YPL090C, LPG18C
UniProt
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX37 Go to UniProtKB: P0CX37
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UniProt Group	P0CX37
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7-A	K [auth U]	184	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS7A, RPS30, YOR096W, YOR3177W
UniProt
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26786 Go to UniProtKB: P26786
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UniProt Group	P26786
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8-A	L [auth V]	198	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS8A, RPS14A, YBL072C, YBL06.05, YBL0613
UniProt
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX39 Go to UniProtKB: P0CX39
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UniProt Group	P0CX39
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9-A	M [auth W]	184	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS9A, RPS13A, YS11A, YPL081W
UniProt
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore O13516 Go to UniProtKB: O13516
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UniProt Group	O13516
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10-A	N [auth C]	92	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS10A, YOR293W
UniProt
Find proteins for Q08745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08745 Go to UniProtKB: Q08745
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UniProt Group	Q08745
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11-A	O [auth X]	142	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS11A, RPS18A, YDR025W, YD9813.03
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Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX47 Go to UniProtKB: P0CX47
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UniProt Group	P0CX47
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S12	P [auth D]	121	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS12, YOR369C
UniProt
Find proteins for P48589 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P48589 Go to UniProtKB: P48589
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UniProt Group	P48589
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	Q [auth Y]	150	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS13, RPS13C, YDR064W, D4252, YD9609.18
UniProt
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05756 Go to UniProtKB: P05756
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UniProt Group	P05756
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S14-B	R [auth Z]	127	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS14B, CRY2, YJL191W, J0354
UniProt
Find proteins for P39516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39516 Go to UniProtKB: P39516
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UniProt Group	P39516
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S16-A	S [auth F]	141	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS16A, RP61R, YMR143W, YM9375.12
UniProt
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX51 Go to UniProtKB: P0CX51
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UniProt Group	P0CX51
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17-B	T [auth G]	125	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS17B, RP51B, YDR447C
UniProt
Find proteins for P14127 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14127 Go to UniProtKB: P14127
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UniProt Group	P14127
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18-A	U [auth H]	145	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS18A, YDR450W, D9461.35
UniProt
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX55 Go to UniProtKB: P0CX55
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UniProt Group	P0CX55
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19-A	V [auth I]	143	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS19A, RP55A, RPS16AA, YOL121C
UniProt
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P07280 Go to UniProtKB: P07280
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UniProt Group	P07280
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	W [auth J]	100	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS20, URP2, YHL015W
UniProt
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38701 Go to UniProtKB: P38701
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UniProt Group	P38701
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S21-A	X [auth a]	87	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS21A, RPS25, RPS25A, RPS26A, YKR057W
UniProt
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0V8 Go to UniProtKB: P0C0V8
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UniProt Group	P0C0V8
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S22-A	Y [auth b]	129	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS22A, RPS24, RPS24A, YJL190C, J0355
UniProt
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0W1 Go to UniProtKB: P0C0W1
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UniProt Group	P0C0W1
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S23-A	Z [auth c]	144	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS23A, RPS28A, YGR118W, G6178
UniProt
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX29 Go to UniProtKB: P0CX29
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UniProt Group	P0CX29
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24-A	AA [auth d]	134	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS24A, RPS24EA, YER074W
UniProt
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX31 Go to UniProtKB: P0CX31
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UniProt Group	P0CX31
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S25-A	BA [auth K]	82	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS25A, RPS31A, YGR027C
UniProt
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E792 Go to UniProtKB: Q3E792
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UniProt Group	Q3E792
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26-B	CA [auth e]	97	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS26B, YER131W
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UniProt Group	P39939
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S27-A	DA [auth f]	81	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS27A, YKL156W
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Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35997 Go to UniProtKB: P35997
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UniProt Group	P35997
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29-A	EA [auth M]	53	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS29A, RPS36A, YS29A, YLR388W, L8084.11
UniProt
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41057 Go to UniProtKB: P41057
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UniProt Group	P41057
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S30-A	FA [auth g]	60	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS30A, YLR287C-A, L8003.23, YLR287BC
UniProt
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX33 Go to UniProtKB: P0CX33
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UniProt Group	P0CX33
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-40S ribosomal protein S31	GA [auth N]	73	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS31, RPS37, UBI3, YLR167W, L9470.14
UniProt
Find proteins for P05759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05759 Go to UniProtKB: P05759
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UniProt Group	P05759
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein subunit beta-like protein	HA [auth O]	312	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: ASC1, CPC2, YMR116C, YM9718.15C
UniProt
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38011 Go to UniProtKB: P38011
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UniProt Group	P38011
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28-A	IA [auth L]	63	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPS28A, RPS33, RPS33A, YOR167C, O3600
UniProt
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E7X9 Go to UniProtKB: Q3E7X9
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UniProt Group	Q3E7X9
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L2-A	MA [auth LD]	251	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL2A, RPL5B, YFR031C-A, YFR031BC
UniProt
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX45 Go to UniProtKB: P0CX45
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UniProt Group	P0CX45
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	NA [auth LE]	386	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL3, MAK8, TCM1, YOR063W, YOR29-14
UniProt
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14126 Go to UniProtKB: P14126
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UniProt Group	P14126
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4-A	OA [auth LF]	361	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL4A, RPL2, RPL2A, YBR031W, YBR0315
UniProt
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10664 Go to UniProtKB: P10664
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UniProt Group	P10664
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	PA [auth LG]	294	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL5, RPL1, RPL1A, YPL131W, LPI14W
UniProt
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UniProt Group	P26321
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6-B	QA [auth LH]	175	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL6B, RPL16B, RPL17B, YL16B, YLR448W, L9324.4
UniProt
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UniProt Group	P05739
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7-A	RA [auth LI]	222	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL7A, RPL6A, RPL8A, YL8A, YGL076C
UniProt
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UniProt Group	P05737
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8-A	SA [auth LJ]	233	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL8A, MAK7, RPL4A, YHL033C
UniProt
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P17076 Go to UniProtKB: P17076
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UniProt Group	P17076
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9-A	TA [auth LK]	191	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL9A, RPL8A, RPL9, YGL147C
UniProt
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05738 Go to UniProtKB: P05738
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UniProt Group	P05738
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10	UA [auth LL]	218	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL10, GRC5, QSR1, YLR075W
UniProt
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41805 Go to UniProtKB: P41805
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UniProt Group	P41805
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11-B	VA [auth LM]	169	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL11B, RP39B, RPL16B, YGR085C
UniProt
Find proteins for Q3E757 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E757 Go to UniProtKB: Q3E757
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UniProt Group	Q3E757
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13-A	WA [auth LN]	193	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL13A, YDL082W
UniProt
Find proteins for Q12690 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12690 Go to UniProtKB: Q12690
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UniProt Group	Q12690
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14-A	XA [auth LO]	136	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL14A, YKL006W, YKL153
UniProt
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36105 Go to UniProtKB: P36105
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UniProt Group	P36105
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15-A	YA [auth LP]	203	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL15A, RPL10A, RPL13A, YL10A, YLR029C
UniProt
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05748 Go to UniProtKB: P05748
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UniProt Group	P05748
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L16-A	ZA [auth LQ]	197	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL16A, RPL13, RPL21A, YIL133C
UniProt
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17-A	AB [auth LR]	183	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL17A, RPL17, RPL20A, YKL180W
UniProt
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18-A	BB [auth Lm]	185	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL18A, RP28A, YOL120C
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Find proteins for P0CX49 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX49 Go to UniProtKB: P0CX49
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UniProt Group	P0CX49
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19-A	CB [auth Ln]	188	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL19A, RPL23A, YL14A, YBR084C-A, YBR084BC
UniProt
Find proteins for P0CX82 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX82 Go to UniProtKB: P0CX82
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UniProt Group	P0CX82
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L20-A	DB [auth Lo]	171	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL20A, RPL18A, RPL18A2, YMR242C, YM9408.04C
UniProt
Find proteins for P0CX23 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX23 Go to UniProtKB: P0CX23
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UniProt Group	P0CX23
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21-A	EB [auth Lp]	159	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL21A, URP1, YBR191W, YBR1401
UniProt
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02753 Go to UniProtKB: Q02753
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UniProt Group	Q02753
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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L22-A	FB [auth Lq]	100	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL22A, YLR061W, L2168
UniProt
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UniProt Group	P05749
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Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23-A	GB [auth Lr]	136	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL23A, RPL17A, RPL17AA, YBL087C, YBL0713
UniProt
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UniProt Group	P0CX41
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Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L24-A	HB [auth LS]	126	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL24A, RP29, RPL30A, YGL031C
UniProt
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Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L25	IB [auth LT]	121	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL25, YOL127W
UniProt
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04456 Go to UniProtKB: P04456
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UniProt Group	P04456
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Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26-A	JB [auth LU]	125	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL26A, RPL26, RPL33A, YLR344W, L8300.4
UniProt
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Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27-A	KB [auth LV]	135	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL27A, RPL27, YHR010W
UniProt
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C2H6 Go to UniProtKB: P0C2H6
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UniProt Group	P0C2H6
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Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	LB [auth LW]	148	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL28, CYH2, YGL103W
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Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P02406 Go to UniProtKB: P02406
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UniProt Group	P02406
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Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L29	MB [auth LX]	58	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL29, YL43, YFR032C-A, YFR032BW
UniProt
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UniProt Group	P05747
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Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	NB [auth LY]	96	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL30, RPL32, YGL030W
UniProt
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14120 Go to UniProtKB: P14120
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UniProt Group	P14120
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Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31-A	OB [auth LZ]	109	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL31A, RPL34, RPL34A, YDL075W, D2478
UniProt
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C2H8 Go to UniProtKB: P0C2H8
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UniProt Group	P0C2H8
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Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	PB [auth La]	127	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL32, YBL092W, YBL0838
UniProt
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38061 Go to UniProtKB: P38061
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UniProt Group	P38061
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Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L33-A	QB [auth Lb]	106	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL33A, RPL37A, YPL143W, LPI4W, P2625
UniProt
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05744 Go to UniProtKB: P05744
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UniProt Group	P05744
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Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34-A	RB [auth Lc]	112	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL34A, YER056C-A, YER056BC
UniProt
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P87262 Go to UniProtKB: P87262
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UniProt Group	P87262
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Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35-A	SB [auth Ld]	119	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL35A, SOS1, YDL191W, D1249
UniProt
Find proteins for P0CX84 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX84 Go to UniProtKB: P0CX84
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UniProt Group	P0CX84
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Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36-A	TB [auth Le]	99	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL36A, RPL39A, YMR194W, YM9646.06
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Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37-A	UB [auth Lf]	81	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL37A, RPL35A, YLR185W, L9470.6
UniProt
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49166 Go to UniProtKB: P49166
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UniProt Group	P49166
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Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	VB [auth Lg]	77	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL38, YLR325C, L8543.2
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UniProt Group	P49167
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Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	WB [auth Lh]	50	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL39, RPL46, SPB2, YJL189W, J0360
UniProt
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UniProt Group	P04650
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Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-60S ribosomal protein L40	XB [auth Li]	52	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL40A, UBI1, YIL148W
UniProt
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CH08 Go to UniProtKB: P0CH08
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UniProt Group	P0CH08
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Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L41-B	YB [auth Lj]	25	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL41B, RPL47B, YL41B, YDL133C-A, YDL133BC
UniProt
Find proteins for P0CX87 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX87 Go to UniProtKB: P0CX87
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UniProt Group	P0CX87
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Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L42-A	ZB [auth Lk]	103	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL42A, RPL41A, SCL41A, YNL162W, N1722
UniProt
Find proteins for P0CX27 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX27 Go to UniProtKB: P0CX27
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UniProt Group	P0CX27
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Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L43-A	AC [auth Ll]	91	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RPL43A, YPR043W, YP9499.02
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UniProt Group	P0CX25
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Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 3A	DC [auth EF]	1,044	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: YEF3, EFC1, TEF3, YEF3A, YLR249W, L9672.5 EC: 3.6.4
UniProt
Find proteins for P16521 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P16521 Go to UniProtKB: P16521
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UniProt Group	P16521
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Entity ID: 1
Molecule	Chains	Length	Organism	Image
18S rRNA	A [auth 2]	1,771	Saccharomyces cerevisiae S288C
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Entity ID: 2
Molecule	Chains	Length	Organism	Image
mRNA	B [auth 1]	7	Saccharomyces cerevisiae S288C
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Entity ID: 36
Molecule	Chains	Length	Organism	Image
25S rRNA	JA [auth LA]	3,223	Saccharomyces cerevisiae S288C
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Entity ID: 37
Molecule	Chains	Length	Organism	Image
5S rRNA	KA [auth LB]	121	Saccharomyces cerevisiae S288C
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Entity ID: 38
Molecule	Chains	Length	Organism	Image
5.8S rRNA	LA [auth LC]	158	Saccharomyces cerevisiae S288C
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Entity ID: 80
Molecule	Chains	Length	Organism	Image
tRNA	BC [auth Sn], CC [auth Sm]	75	Saccharomyces cerevisiae S288C
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Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP Query on ATP Download Ideal Coordinates CCD File SDF format, chain EC [auth EF] SDF format, chain FC [auth EF] MOL2 format, chain EC [auth EF] MOL2 format, chain FC [auth EF]	EC [auth EF], FC [auth EF]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	DC [auth EF]	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2021-03-10

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	--
H2020 Marie Curie Actions of the European Commission	Germany	2643
Howard Hughes Medical Institute (HHMI)		--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)		R37GM059425

Revision History (Full details and data files)

Version 1.0: 2021-03-10
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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7B7D

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

eEF3 promotes late stages of tRNA translocation including E-tRNA release from the ribosome

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