7B7D | pdb_00007b7d

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

PDB DOI: https://doi.org/10.2210/pdb7B7D/pdb
EM Map EMD-12081: EMDB EMDataResource
NAKB: 7B7D

Classification: TRANSLATION
Organism(s): Saccharomyces cerevisiae S288C
Mutation(s): No

Deposited: 2020-12-10 Released: 2021-03-10
Deposition Author(s): Ranjan, N., Pochopien, A.A., Wu, C.C., Beckert, B., Blanchet, S., Green, R., Rodnina, M.V., Wilson, D.N.
Funding Organization(s): German Research Foundation (DFG), H2020 Marie Curie Actions of the European Commission, Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

eEF3 promotes late stages of tRNA translocation including E-tRNA release from the ribosome

Ranjan, N., Pochopien, A.A., Wu, C.C., Beckert, B., Blanchet, S., Green, R., Rodnina, M.V., Wilson, D.N.

To be published.

Macromolecule Content

Total Structure Weight: 3,128.54 kDa
Atom Count: 211,144
Modeled Residue Count: 17,541
Deposited Residue Count: 17,637
Unique protein chains: 75
Unique nucleic acid chains: 6

Macromolecules

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S0-A	C [auth P]	206	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32905 Go to UniProtKB: P32905
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P32905
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S1-A	D [auth Q]	232	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P33442 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P33442 Go to UniProtKB: P33442
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UniProt Group	P33442
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15	E	117	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q01855 Go to UniProtKB: Q01855
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UniProt Group	Q01855
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	F [auth R]	216	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25443 Go to UniProtKB: P25443
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UniProt Group	P25443
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3	G [auth A]	222	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05750 Go to UniProtKB: P05750
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P05750
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4-A	H [auth S]	258	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX35 Go to UniProtKB: P0CX35
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX35
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	I [auth B]	206	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26783 Go to UniProtKB: P26783
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UniProt Group	P26783
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6-A	J [auth T]	228	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX37 Go to UniProtKB: P0CX37
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX37
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7-A	K [auth U]	184	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26786 Go to UniProtKB: P26786
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P26786
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8-A	L [auth V]	198	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX39 Go to UniProtKB: P0CX39
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX39
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9-A	M [auth W]	184	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore O13516 Go to UniProtKB: O13516
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O13516
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10-A	N [auth C]	92	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q08745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08745 Go to UniProtKB: Q08745
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q08745
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11-A	O [auth X]	142	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX47 Go to UniProtKB: P0CX47
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX47
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S12	P [auth D]	121	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P48589 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P48589 Go to UniProtKB: P48589
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P48589
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	Q [auth Y]	150	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05756 Go to UniProtKB: P05756
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P05756
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S14-B	R [auth Z]	127	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P39516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39516 Go to UniProtKB: P39516
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P39516
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S16-A	S [auth F]	141	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX51 Go to UniProtKB: P0CX51
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX51
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17-B	T [auth G]	125	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P14127 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14127 Go to UniProtKB: P14127
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14127
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18-A	U [auth H]	145	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX55 Go to UniProtKB: P0CX55
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX55
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19-A	V [auth I]	143	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P07280 Go to UniProtKB: P07280
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UniProt Group	P07280
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	W [auth J]	100	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38701 Go to UniProtKB: P38701
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UniProt Group	P38701
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S21-A	X [auth a]	87	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0V8 Go to UniProtKB: P0C0V8
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0C0V8
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S22-A	Y [auth b]	129	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0W1 Go to UniProtKB: P0C0W1
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UniProt Group	P0C0W1
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S23-A	Z [auth c]	144	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX29 Go to UniProtKB: P0CX29
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UniProt Group	P0CX29
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24-A	AA [auth d]	134	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX31 Go to UniProtKB: P0CX31
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX31
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S25-A	BA [auth K]	82	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E792 Go to UniProtKB: Q3E792
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UniProt Group	Q3E792
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26-B	CA [auth e]	97	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P39939 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39939 Go to UniProtKB: P39939
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P39939
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S27-A	DA [auth f]	81	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35997 Go to UniProtKB: P35997
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UniProt Group	P35997
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29-A	EA [auth M]	53	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41057 Go to UniProtKB: P41057
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UniProt Group	P41057
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S30-A	FA [auth g]	60	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX33 Go to UniProtKB: P0CX33
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UniProt Group	P0CX33
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-40S ribosomal protein S31	GA [auth N]	73	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05759 Go to UniProtKB: P05759
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UniProt Group	P05759
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein subunit beta-like protein	HA [auth O]	312	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38011 Go to UniProtKB: P38011
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UniProt Group	P38011
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28-A	IA [auth L]	63	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E7X9 Go to UniProtKB: Q3E7X9
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UniProt Group	Q3E7X9
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L2-A	MA [auth LD]	251	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX45 Go to UniProtKB: P0CX45
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UniProt Group	P0CX45
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	NA [auth LE]	386	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14126 Go to UniProtKB: P14126
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UniProt Group	P14126
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4-A	OA [auth LF]	361	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10664 Go to UniProtKB: P10664
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UniProt Group	P10664
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	PA [auth LG]	294	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26321 Go to UniProtKB: P26321
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UniProt Group	P26321
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6-B	QA [auth LH]	175	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05739 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05739 Go to UniProtKB: P05739
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UniProt Group	P05739
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7-A	RA [auth LI]	222	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05737 Go to UniProtKB: P05737
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UniProt Group	P05737
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8-A	SA [auth LJ]	233	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P17076 Go to UniProtKB: P17076
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UniProt Group	P17076
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9-A	TA [auth LK]	191	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05738 Go to UniProtKB: P05738
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UniProt Group	P05738
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10	UA [auth LL]	218	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41805 Go to UniProtKB: P41805
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UniProt Group	P41805
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11-B	VA [auth LM]	169	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q3E757 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E757 Go to UniProtKB: Q3E757
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UniProt Group	Q3E757
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13-A	WA [auth LN]	193	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q12690 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12690 Go to UniProtKB: Q12690
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UniProt Group	Q12690
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14-A	XA [auth LO]	136	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36105 Go to UniProtKB: P36105
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UniProt Group	P36105
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15-A	YA [auth LP]	203	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05748 Go to UniProtKB: P05748
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UniProt Group	P05748
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L16-A	ZA [auth LQ]	197	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26784 Go to UniProtKB: P26784
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UniProt Group	P26784
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17-A	AB [auth LR]	183	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05740 Go to UniProtKB: P05740
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18-A	BB [auth Lm]	185	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX49 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX49 Go to UniProtKB: P0CX49
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19-A	CB [auth Ln]	188	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX82 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX82 Go to UniProtKB: P0CX82
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L20-A	DB [auth Lo]	171	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX23 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX23 Go to UniProtKB: P0CX23
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21-A	EB [auth Lp]	159	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02753 Go to UniProtKB: Q02753
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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L22-A	FB [auth Lq]	100	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05749 Go to UniProtKB: P05749
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Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23-A	GB [auth Lr]	136	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX41 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX41 Go to UniProtKB: P0CX41
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Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L24-A	HB [auth LS]	126	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04449 Go to UniProtKB: P04449
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Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L25	IB [auth LT]	121	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04456 Go to UniProtKB: P04456
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Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26-A	JB [auth LU]	125	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05743 Go to UniProtKB: P05743
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Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27-A	KB [auth LV]	135	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C2H6 Go to UniProtKB: P0C2H6
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UniProt Group	P0C2H6
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Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	LB [auth LW]	148	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P02406 Go to UniProtKB: P02406
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Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L29	MB [auth LX]	58	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05747 Go to UniProtKB: P05747
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Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	NB [auth LY]	96	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14120 Go to UniProtKB: P14120
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UniProt Group	P14120
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Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31-A	OB [auth LZ]	109	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C2H8 Go to UniProtKB: P0C2H8
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UniProt Group	P0C2H8
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Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	PB [auth La]	127	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38061 Go to UniProtKB: P38061
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UniProt Group	P38061
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Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L33-A	QB [auth Lb]	106	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05744 Go to UniProtKB: P05744
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Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34-A	RB [auth Lc]	112	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P87262 Go to UniProtKB: P87262
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UniProt Group	P87262
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Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35-A	SB [auth Ld]	119	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX84 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX84 Go to UniProtKB: P0CX84
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UniProt Group	P0CX84
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Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36-A	TB [auth Le]	99	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05745 Go to UniProtKB: P05745
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Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37-A	UB [auth Lf]	81	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49166 Go to UniProtKB: P49166
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Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	VB [auth Lg]	77	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
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Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	WB [auth Lh]	50	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
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UniProt Group	P04650
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Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-60S ribosomal protein L40	XB [auth Li]	52	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CH08 Go to UniProtKB: P0CH08
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UniProt Group	P0CH08
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Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L41-B	YB [auth Lj]	25	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX87 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX87 Go to UniProtKB: P0CX87
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UniProt Group	P0CX87
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Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L42-A	ZB [auth Lk]	103	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
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UniProt Group	P0CX27
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Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L43-A	AC [auth Ll]	91	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
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UniProt Group	P0CX25
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Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 3A	DC [auth EF]	1,044	Saccharomyces cerevisiae S288C	Mutation(s): 0 EC: 3.6.4
UniProt
Find proteins for P16521 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P16521 Go to UniProtKB: P16521
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UniProt Group	P16521
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Molecule	Chains	Length	Organism
Entity ID: 1
18S rRNA	A [auth 2]	1,771	Saccharomyces cerevisiae S288C
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Molecule	Chains	Length	Organism
Entity ID: 2
mRNA	B [auth 1]	7	Saccharomyces cerevisiae S288C
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Molecule	Chains	Length	Organism
Entity ID: 36
25S rRNA	JA [auth LA]	3,223	Saccharomyces cerevisiae S288C
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Molecule	Chains	Length	Organism
Entity ID: 37
5S rRNA	KA [auth LB]	121	Saccharomyces cerevisiae S288C
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Molecule	Chains	Length	Organism
Entity ID: 38
5.8S rRNA	LA [auth LC]	158	Saccharomyces cerevisiae S288C
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Molecule	Chains	Length	Organism
Entity ID: 80
tRNA	BC [auth Sn], CC [auth Sm]	75	Saccharomyces cerevisiae S288C
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Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP Query on ATP Download:Ideal Coordinates CCD File SDF format, chain FC [auth EF] SDF format, chain EC [auth EF] MOL2 format, chain FC [auth EF] MOL2 format, chain EC [auth EF] mmCIF format, chain FC [auth EF] mmCIF format, chain EC [auth EF]	EC [auth EF], FC [auth EF]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain EC [auth EF] Focus chain FC [auth EF] Interactions & Density Focus chain EC [auth EF] Focus chain FC [auth EF]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	DC [auth EF]	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-03-10

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	--
H2020 Marie Curie Actions of the European Commission	Germany	2643
Howard Hughes Medical Institute (HHMI)		--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)		R37GM059425

Revision History (Full details and data files)

Version 1.0: 2021-03-10
Type: Initial release
Version 1.1: 2025-04-09
Changes: Data collection, Database references, Structure summary
Version 1.2: 2025-10-01
Changes: Advisory, Data collection, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7B7D | pdb_00007b7d

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Literature

eEF3 promotes late stages of tRNA translocation including E-tRNA release from the ribosome

Biological Assembly 1

Macromolecules

Entity ID: 3

UniProt

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Entity ID: 4

UniProt

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UniProt

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Entity ID: 9

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Entity ID: 10

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Entity ID: 12

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Entity ID: 16

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Entity ID: 17

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Entity ID: 18

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Entity ID: 19

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Entity ID: 21

UniProt