7APX

yeast THO-Sub2 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural insights into the nucleic acid remodeling mechanisms of the yeast THO-Sub2 complex.

Schuller, S.K.Schuller, J.M.Prabu, J.R.Baumgartner, M.Bonneau, F.Basquin, J.Conti, E.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.61467
  • Primary Citation of Related Structures:  
    7APX, 7AQO

  • PubMed Abstract: 

    The yeast THO complex is recruited to active genes and interacts with the RNA-dependent ATPase Sub2 to facilitate the formation of mature export-competent messenger ribonucleoprotein particles and to prevent the co-transcriptional formation of RNA:DNA-hybrid-containing structures. How THO-containing complexes function at the mechanistic level is unclear. Here, we elucidated a 3.4 Å resolution structure of Saccharomyces cerevisiae THO-Sub2 by cryo-electron microscopy. THO subunits Tho2 and Hpr1 intertwine to form a platform that is bound by Mft1, Thp2, and Tex1. The resulting complex homodimerizes in an asymmetric fashion, with a Sub2 molecule attached to each protomer. The homodimerization interfaces serve as a fulcrum for a seesaw-like movement concomitant with conformational changes of the Sub2 ATPase. The overall structural architecture and topology suggest the molecular mechanisms of nucleic acid remodeling during mRNA biogenesis.


  • Organizational Affiliation

    Department of Structural Cell Biology, Max Planck Institute of Biochemistry, Munich, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit 2,Tho21,620Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: THO2LDB5RLR1ZRG13YNL139CN1209N1835
UniProt
Find proteins for P53552 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P53552
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UniProt GroupP53552
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit HPR1720Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: HPR1YDR138WYD9302.14
UniProt
Find proteins for P17629 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P17629
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UniProt GroupP17629
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit THP2261Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: THP2YHR167W
UniProt
Find proteins for O13539 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupO13539
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit MFT1392Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MFT1YML062C
UniProt
Find proteins for P33441 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP33441
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Protein TEX1380Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TEX1YNL253WN0860
UniProt
Find proteins for P53851 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP53851
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent RNA helicase SUB2400Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SUB2YDL084W
EC: 3.6.4.13
UniProt
Find proteins for Q07478 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ07478
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)GermanyERC Advanced Investigator Grant EXORICO
German Research Foundation (DFG)GermanyGRK1721, SFB/TRR 237

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-02
    Type: Initial release