7AED

VirB8 domain of PrgL from Enterococcus faecalis pCF10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.180 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the enterococcal T4SS protein PrgL reveals unique dimerization interface in the VirB8 protein family

Jaeger, F.Lamy, A.Guerini, N.Sun, W.S.Berntsson, R.P.A.

(2020) Biorxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PrgLA, B195Enterococcus faecalisMutation(s): 0 
Gene Names: prgL
UniProt
Find proteins for D1LHF8 (Enterococcus faecalis)
Explore D1LHF8 
Go to UniProtKB:  D1LHF8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BTB
Query on BTB

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.180 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 124.521α = 90
b = 124.521β = 90
c = 66.426γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALEPACKdata scaling
SOLVEphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wenner-Gren FoundationSwedenUPD2018-0008
Swedish Research CouncilSweden2016- 03599

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-18
    Type: Initial release