7A6U | pdb_00007a6u

Cryo-EM structure of the cytoplasmic domain of human TRPC6

• PDB DOI: https://doi.org/10.2210/pdb7A6U/pdb
• EM Map EMD-11674: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2020-08-26 Released: 2020-09-30 
• Deposition Author(s): Grieben, M., Pike, A.C.W., Wang, D., Mukhopadhyay, S.M.M., Chalk, R., Marsden, B.D., Burgess-Brown, N.A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)
• Funding Organization(s): Wellcome Trust, European Commission

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.62 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Cryo-EM structure of the cytoplasmic domain of human TRPC6

Grieben, M., Carpenter, E.P.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C4  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 439.4 kDa 
• Atom Count: 10,140 
• Modeled Residue Count: 1,328 
• Deposited Residue Count: 3,828 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Short transient receptor potential channel 6	A, B, C, D	957	Homo sapiens	Mutation(s): 0  Gene Names: TRPC6, TRP6
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y210 (Homo sapiens) Explore Q9Y210  Go to UniProtKB:  Q9Y210
PHAROS:  Q9Y210 GTEx:  ENSG00000137672

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UNX	E [auth A], F [auth B], G [auth C], H [auth D]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.62 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	2.15.0
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-09-30 
Deposition Author(s): Grieben, M., Pike, A.C.W., Wang, D., Mukhopadhyay, S.M.M., Chalk, R., Marsden, B.D., Burgess-Brown, N.A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	106169/Z/14/Z
European Commission	United Kingdom	115766

Revision History  

• Version 1.0: 2020-09-30
  Type: Initial release
  
• Version 2.0: 2021-07-07
  Type: Coordinate replacement
  Reason: Ligand identity
  Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Derived calculations, Non-polymer description, Structure summary
• Version 2.1: 2024-07-10
  Changes: Data collection, Database references, Refinement description