Diversity in Linker Histone-Nucleosome Interactions Between and Within Variants
Adhireksan, Z., Qiuye, B., Lee, P.L., Sharma, D., Padavattan, S., Davey, C.A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H3.1 | 138 | Homo sapiens | Mutation(s): 0  Gene Names:  H3C1, H3FA, HIST1H3A, H3C2, H3FL, HIST1H3B, H3C3, H3FC HIST1H3C, H3C4, H3FB... | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P68431 (Homo sapiens) Explore P68431  Go to UniProtKB:  P68431 | |||||
PHAROS:  P68431 GTEx:  ENSG00000197409  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68431 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H4 | 105 | Homo sapiens | Mutation(s): 0  Gene Names:  H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, H4/G... | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62805 (Homo sapiens) Explore P62805  Go to UniProtKB:  P62805 | |||||
PHAROS:  P62805 GTEx:  ENSG00000274618  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62805 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2A type 1-B/E | 132 | Homo sapiens | Mutation(s): 0  Gene Names: H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04908 (Homo sapiens) Explore P04908  Go to UniProtKB:  P04908 | |||||
PHAROS:  P04908 GTEx:  ENSG00000277075  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04908 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2B type 1-J | 128 | Homo sapiens | Mutation(s): 0  Gene Names: H2BC11, H2BFR, HIST1H2BJ | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06899 (Homo sapiens) Explore P06899  Go to UniProtKB:  P06899 | |||||
PHAROS:  P06899 GTEx:  ENSG00000124635  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06899 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H1.10 | 214 | Homo sapiens | Mutation(s): 0  Gene Names: H1-10, H1FX | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q92522 (Homo sapiens) Explore Q92522  Go to UniProtKB:  Q92522 | |||||
PHAROS:  Q92522 GTEx:  ENSG00000184897  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q92522 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (169-MER) | 169 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
DNA (169-MER) | 169 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA Query on CA | AC [auth S] BA [auth C] CB [auth L] DA [auth G] DC [auth T] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
K Query on K | AA [auth C] AB [auth J] BC [auth S] CC [auth S] EB [auth M] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
CL Query on CL | BB [auth K] CA [auth E] DB [auth M] GA [auth G] GB [auth O] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 104.852 | α = 90 |
b = 102.111 | β = 96.34 |
c = 216.179 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
SCALA | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Ministry of Education (MoE, Singapore) | Singapore | MOE2015-T2-2-089 |
Ministry of Education (MoE, Singapore) | Singapore | MOE2012-T3-1-001 |