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 6ZV2 | pdb_00006zv2

TFIIS N-terminal domain (TND) from human PPP1R10


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 40 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 6ZV2

This is version 1.3 of the entry. See complete history. 

Literature

A ubiquitous disordered protein interaction module orchestrates transcription elongation.

Cermakova, K., Demeulemeester, J., Lux, V., Nedomova, M., Goldman, S.R., Smith, E.A., Srb, P., Hexnerova, R., Fabry, M., Madlikova, M., Horejsi, M., De Rijck, J., Debyser, Z., Adelman, K., Hodges, H.C., Veverka, V.

(2021) Science 374: 1113-1121

  • DOI: https://doi.org/10.1126/science.abe2913
  • Primary Citation Related Structures: 
    6ZUY, 6ZUZ, 6ZV0, 6ZV1, 6ZV2, 6ZV3, 6ZV4

  • PubMed Abstract: 

    During eukaryotic transcription elongation, RNA polymerase II (RNAP2) is regulated by a chorus of factors. Here, we identified a common binary interaction module consisting of TFIIS N-terminal domains (TNDs) and natively unstructured TND-interacting motifs (TIMs). This module was conserved among the elongation machinery and linked complexes including transcription factor TFIIS, Mediator, super elongation complex, elongin, IWS1, SPT6, PP1-PNUTS phosphatase, H3K36me3 readers, and other factors. Using nuclear magnetic resonance, live-cell microscopy, and mass spectrometry, we revealed the structural basis for these interactions and found that TND-TIM sequences were necessary and sufficient to induce strong and specific colocalization in the crowded nuclear environment. Disruption of a single TIM in IWS1 induced robust changes in gene expression and RNAP2 elongation dynamics, which underscores the functional importance of TND-TIM surfaces for transcription elongation.


  • Organizational Affiliation: 
    • Center for Precision Environmental Health, Department of Molecular and Cellular Biology, and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.

Macromolecule Content 

  • Total Structure Weight: 17.22 kDa 
  • Atom Count: 1,207 
  • Modeled Residue Count: 154 
  • Deposited Residue Count: 154 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Serine/threonine-protein phosphatase 1 regulatory subunit 10154Homo sapiensMutation(s): 0 
Gene Names: PPP1R10, CAT53, FB19, PNUTS
UniProt & NIH Common Fund Data Resources
Find proteins for Q96QC0 (Homo sapiens)
Explore Q96QC0 
Go to UniProtKB:  Q96QC0
PHAROS:  Q96QC0
GTEx:  ENSG00000204569 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96QC0
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 40 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2021-12-01 
  • Deposition Author(s): Veverka, V.

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-01
    Type: Initial release
  • Version 1.1: 2021-12-08
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Other
  • Version 1.3: 2024-06-19
    Changes: Data collection, Database references