Download MendeleySYK Kinase domain in complex with azabenzimidazole inhibitor 2b
Read, J.A.To be published.
6ZC0
SYK Kinase domain in complex with azabenzimidazole inhibitor 2b
- PDB DOI: https://doi.org/10.2210/pdb6ZC0/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-06-09 Released: 2021-06-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.229
- R-Value Work: 0.192
- R-Value Observed: 0.194
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosine-protein kinase SYK | 299 | Homo sapiens | Mutation(s): 0 Gene Names: SYK EC: 2.7.10.2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P43405 (Homo sapiens) Explore P43405 Go to UniProtKB: P43405 | |||||
PHAROS: P43405 GTEx: ENSG00000165025 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P43405 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| QDZ (Subject of Investigation/LOI) Query on QDZ | B [auth A] | ~{N},~{N}-dimethyl-1-[1-[2-(1-methylindol-4-yl)-3~{H}-imidazo[4,5-b]pyridin-7-yl]pyrazol-4-yl]methanamine C21 H21 N7 TVDTXKARIOKJSV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.229
- R-Value Work: 0.192
- R-Value Observed: 0.194
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.067 | α = 90 |
| b = 87.712 | β = 90 |
| c = 88.043 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| BUSTER | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2021-06-23 Deposition Author(s): Read, J.A.
Revision History (Full details and data files)
- Version 1.0: 2021-06-23
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description
