6Z6C

Crystal structurel of FleA lectin in complex with a monovalent inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.158 
  • R-Value Work: 0.118 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Hexavalent thiofucosides to probe the role of the Aspergillus fumigatus lectin FleA in fungal pathogenicity.

Dussouy, C.Lalys, P.A.Cabanettes, A.Lehot, V.Deniaud, D.Gillon, E.Balloy, V.Varrot, A.Gouin, S.G.

(2021) Org Biomol Chem 19: 3234-3240

  • DOI: https://doi.org/10.1039/d1ob00152c
  • Primary Citation of Related Structures:  
    6Z6C

  • PubMed Abstract: 

    Aspergillus fumigatus is a pathogenic fungus infecting the respiratory system and responsible for a variety of life-threatening lung diseases. A fucose-binding lectin named FleA which has a controversial role in A. fumigatus pathogenesis was recently identified. New chemical probes with high affinity and enzymatic stability are needed to explore the role of FleA in the infection process. In this study, we developed potent FleA antagonists based on optimized and non-hydrolysable thiofucoside ligands. We first synthesized a set of monovalent sugars showing micromolar affinity for FleA by isothermal titration calorimetry. The most potent derivative was co-crystallized with FleA to gain insights into the binding mode in operation. Its chemical multimerization on a cyclodextrin scaffold led to an hexavalent compound with a significantly enhanced binding affinity (K d = 223 ± 21 nM) thanks to a chelate binding mode. The compound could probe the role of bronchial epithelial cells in a FleA-mediated response to tissue invasion.


  • Organizational Affiliation

    Université de Nantes, CNRS, CEISAM UMR, 6230, F-44000, Nantes, France. sebastien.gouin@univ-nantes.fr.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fucose-specific lectinA [auth AAA],
B [auth BBB]
317Aspergillus fumigatus Af293Mutation(s): 0 
Gene Names: fleAAFUA_5G14740
UniProt
Find proteins for Q4WW81 (Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293))
Explore Q4WW81 
Go to UniProtKB:  Q4WW81
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4WW81
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
Q9Q (Subject of Investigation/LOI)
Query on Q9Q

Download Ideal Coordinates CCD File 
C [auth AAA]
D [auth AAA]
E [auth AAA]
G [auth AAA]
H [auth AAA]
C [auth AAA],
D [auth AAA],
E [auth AAA],
G [auth AAA],
H [auth AAA],
J [auth BBB],
K [auth BBB],
L [auth BBB],
N [auth BBB]
4-((1-(2-(2-(2-(2-hydroxyethoxy)ethoxy)ethoxy)ethyl)-1H-1,2,3-triazol-4-yl)methoxy)benzyl-a-L-thiofucoside
C24 H37 N3 O9 S
YKPIHJOKBVPCNG-BQEPTVRSSA-N
PGE (Subject of Investigation/LOI)
Query on PGE

Download Ideal Coordinates CCD File 
M [auth BBB]TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
GOL (Subject of Investigation/LOI)
Query on GOL

Download Ideal Coordinates CCD File 
F [auth AAA],
O [auth BBB]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
I [auth AAA]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.158 
  • R-Value Work: 0.118 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.117α = 103.083
b = 46.893β = 98.536
c = 80.173γ = 108.512
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

  • Released Date: 2021-04-07 
  • Deposition Author(s): Varrot, A.

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-07
    Type: Initial release
  • Version 1.1: 2021-05-05
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Database references, Derived calculations, Refinement description