6Z2S

Crystal structure of adhibin analogue-bound myosin-2

PDB DOI: https://doi.org/10.2210/pdb6Z2S/pdb

Classification: MOTOR PROTEIN
Organism(s): Dictyostelium discoideum
Expression System: Dictyostelium discoideum
Mutation(s): No

Deposited: 2020-05-18 Released: 2021-06-09
Deposition Author(s): Ewert, W., Knoelker, H.-J., Tsiavaliaris, G., Preller, M.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.20 Å
R-Value Free: 0.262
R-Value Work: 0.218
R-Value Observed: 0.220

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

The synthetic carbazole adhibin acts as selective myosin class-IX inhibitor in lung cancer cells

Bader, A., Ewert, W., Knoelker, H.-J., Preller, M., Tsiavaliaris, G.

To be published.

Macromolecule Content

Total Structure Weight: 91.56 kDa
Atom Count: 5,885
Modelled Residue Count: 748
Deposited Residue Count: 788
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Myosin-2 heavy chain	A	788	Dictyostelium discoideum	Mutation(s): 0 Gene Names: mhcA, DDB_G0286355
UniProt
Find proteins for P08799 (Dictyostelium discoideum) Explore P08799 Go to UniProtKB: P08799
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P08799
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AD9 Query on AD9 Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A]	D [auth A]	ADP METAVANADATE C₁₀ H₁₆ N₅ O₁₃ P₂ V XLVFTLJPBLXCED-KWIZKVQNSA-K		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]
Q5Q (Subject of Investigation/LOI) Query on Q5Q Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	3,6-dibromo-1-(hydroxymethyl)carbazole C₁₃ H₉ Br₂ N O LFOHIKGNXVHWSB-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain J [auth A] SDF format, chain K [auth A] SDF format, chain L [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth A] MOL2 format, chain L [auth A]	F [auth A], G [auth A], J [auth A], K [auth A], L [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth A] SDF format, chain I [auth A] MOL2 format, chain E [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A]	E [auth A], H [auth A], I [auth A]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain E [auth A] Focus chain H [auth A] Focus chain I [auth A] Interactions & Density Focus chain E [auth A] Focus chain H [auth A] Focus chain I [auth A]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]