6YMQ

TREM2 extracellular domain (19-131) in complex with single-chain variable 4 (scFv-4)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.07 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.274 
  • R-Value Observed: 0.274 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Selection and structural characterisation of anti-TREM2 scFvs that reduce levels of shed ectodomain

Szykowska, A.Chen, Y.Smith, T.B.Preger, C.Yang, J.Qian, D.Mukhopadhyay, S.Wigren, E.Neame, S.J.Graslund, S.Persson, H.Atkinson, P.J.Di Daniel, E.Mead, E.Wang, J.Davis, J.B.Burgess-Brown, N.A.Bullock, A.N.

(2021) Biorxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Single-chain variable 4 ABCDEF245Homo sapiensMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Triggering receptor expressed on myeloid cells 2 D000GHIJK125Homo sapiensMutation(s): 0 
Gene Names: TREM2
Find proteins for Q9NZC2 (Homo sapiens)
Explore Q9NZC2 
Go to UniProtKB:  Q9NZC2
NIH Common Fund Data Resources
PHAROS:  Q9NZC2
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.07 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.274 
  • R-Value Observed: 0.274 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 167.51α = 90
b = 180.77β = 90
c = 125.51γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
xia2data processing
Cootmodel building
DIALSdata reduction
DIALSdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2021-02-17
    Type: Initial release