6XYG

Femtosecond structure of bovine trypsin at room temperature

• PDB DOI: https://doi.org/10.2210/pdb6XYG/pdb

• Classification: HYDROLASE
• Organism(s): Bos taurus
• Mutation(s): No 


• Deposited: 2020-01-30 Released: 2021-02-10 
• Deposition Author(s): Jensen, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.194 
• R-Value Work: 0.165 
• R-Value Observed: 0.166 

Literature

High-resolution macromolecular crystallography at the FemtoMAX beamline with time-over-threshold photon detection

Jensen, M., Bengtsson, A.U.J., Ekstrom, J.C., Garcia-Bonete, M.J., Jurgilaitis, A., Kroon, D., Pham, V.T., Checcia, S., Coudert-Alteirac, H., Schewa, S., Rossle, M., Rodilla, H., Stake, J., Zhaunerchyk, V., Larsson, J., Katona, G.

(2021) J Synchrotron Radiat 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 23.58 kDa 
• Atom Count: 1,822 
• Modelled Residue Count: 223 
• Deposited Residue Count: 223 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cationic trypsin	A	223	Bos taurus	Mutation(s): 0  EC: 3.4.21.4
UniProt
Find proteins for P00760 (Bos taurus) Explore P00760  Go to UniProtKB:  P00760

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BEN	B [auth A]	BENZAMIDINE C7 H8 N2 PXXJHWLDUBFPOL-UHFFFAOYSA-N
SO4	C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
CA	D [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.194 
• R-Value Work: 0.165 
• R-Value Observed: 0.166 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.84	α = 90
b = 58.7	β = 90
c = 67.47	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-02-10 
Deposition Author(s): Jensen, M.

Revision History  

• Version 1.0: 2021-02-10
  Type: Initial release
  
• Version 2.0: 2021-08-04
  Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
• Version 2.1: 2023-02-08
  Changes: Database references
• Version 2.2: 2024-02-07
  Changes: Data collection, Refinement description