6XU7

Drosophila melanogaster Testis polysome ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.

Hopes, T.Norris, K.Agapiou, M.McCarthy, C.G.P.Lewis, P.A.O'Connell, M.J.Fontana, J.Aspden, J.L.

(2022) Nucleic Acids Res 50: 2240-2257

  • DOI: https://doi.org/10.1093/nar/gkab606
  • Primary Citation of Related Structures:  
    6XU6, 6XU7, 6XU8

  • PubMed Abstract: 

    Ribosomes have long been thought of as homogeneous macromolecular machines, but recent evidence suggests they are heterogeneous and could be specialised to regulate translation. Here, we have characterised ribosomal protein heterogeneity across 4 tissues of Drosophila melanogaster. We find that testes and ovaries contain the most heterogeneous ribosome populations, which occurs through a combination of paralog-enrichment and paralog-switching. We have solved structures of ribosomes purified from in vivo tissues by cryo-EM, revealing differences in precise ribosomal arrangement for testis and ovary 80S ribosomes. Differences in the amino acid composition of paralog pairs and their localisation on the ribosome exterior indicate paralog-switching could alter the ribosome surface, enabling different proteins to regulate translation. One testis-specific paralog-switching pair is also found in humans, suggesting this is a conserved site of ribosome heterogeneity. Overall, this work allows us to propose that mRNA translation might be regulated in the gonads through ribosome heterogeneity, providing a potential means of ribosome specialisation.


  • Organizational Affiliation

    School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein SAA [auth AA]218Drosophila melanogasterMutation(s): 0 
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Find proteins for P38979 (Drosophila melanogaster)
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L8B [auth CA]253Drosophila melanogasterMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aC [auth AB]220Drosophila melanogasterMutation(s): 0 
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Find proteins for P55830 (Drosophila melanogaster)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L3D [auth CB]414Drosophila melanogasterMutation(s): 0 
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Find proteins for O16797 (Drosophila melanogaster)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2E [auth AC]227Drosophila melanogasterMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L4F [auth CC]392Drosophila melanogasterMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein subunit beta-like proteinG [auth Ag]318Drosophila melanogasterMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S20H [auth AU]102Drosophila melanogasterMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14aI [auth AO]134Drosophila melanogasterMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23J [auth AX]143Drosophila melanogasterMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12K [auth AM]119Drosophila melanogasterMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S18L [auth AS]137Drosophila melanogasterMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S29M [auth Ad]52Drosophila melanogasterMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13N [auth AN]150Drosophila melanogasterMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11O [auth AL]155Drosophila melanogasterMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17P [auth AR]120Drosophila melanogasterMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
GEO07301p1Q [auth AP]124Drosophila melanogasterMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21R [auth AV]82Drosophila melanogasterMutation(s): 0 
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Find proteins for O76927 (Drosophila melanogaster)
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24S [auth AY]126Drosophila melanogasterMutation(s): 0 
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Find proteins for Q9W229 (Drosophila melanogaster)
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25T [auth AZ]74Drosophila melanogasterMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26U [auth Aa]107Drosophila melanogasterMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27V [auth Ab]84Drosophila melanogasterMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3W [auth AD]227Drosophila melanogasterMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30X [auth Ae]58Drosophila melanogasterMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aY [auth Af]80Drosophila melanogasterMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S9Z [auth AJ]181Drosophila melanogasterMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27aAA [auth Ca]149Drosophila melanogasterMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L15BA [auth CN]203Drosophila melanogasterMutation(s): 0 
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MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10CA [auth CI]217Drosophila melanogasterMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L5DA [auth CD]290Drosophila melanogasterMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18EA [auth CQ]187Drosophila melanogasterMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L19FA [auth CR]203Drosophila melanogasterMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18aGA [auth CS]173Drosophila melanogasterMutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
RE62581pHA [auth CT]158Drosophila melanogasterMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L17IA [auth CP]185Drosophila melanogasterMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
IP17216pJA [auth CX]120Drosophila melanogasterMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
GEO07453p1KA [auth CY]131Drosophila melanogasterMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27LA [auth CZ]134Drosophila melanogasterMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28MA [auth Cr]134Drosophila melanogasterMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
FI02809pNA [auth Ch]123Drosophila melanogasterMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29OA [auth Cb]75Drosophila melanogasterMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
RE25263pPA [auth Cc]100Drosophila melanogasterMutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L31QA [auth Cd]111Drosophila melanogasterMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L32RA [auth Ce]132Drosophila melanogasterMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
GEO07455p1SA [auth Cf]157Drosophila melanogasterMutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36TA [auth Ci]113Drosophila melanogasterMutation(s): 0 
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MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38UA [auth Ck]70Drosophila melanogasterMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39VA [auth Cl]50Drosophila melanogasterMutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40WA [auth Cm]52Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41XA [auth Cn]25Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aYA [auth Cp]91Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VMU4 (Drosophila melanogaster)
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
TA01007pZA [auth Co]104Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for C5WLN8 (Drosophila melanogaster)
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11AB [auth CJ]182Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P46222 (Drosophila melanogaster)
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9BB [auth CH]190Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P50882 (Drosophila melanogaster)
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L6, isoform ACB [auth CE]228Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aDB [auth CG]241Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10a-2HB [auth Cz]217Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28KB [auth Ac]62Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15AaLB [auth AW]129Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L24MB [auth CW]58Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
RH48056pNB [auth Cg]104Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VHE5 (Drosophila melanogaster)
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L22-like proteinOB [auth CU]96Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for E2JE76 (Drosophila melanogaster)
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10bPB [auth AK]90Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19aQB [auth AT]143Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P39018 (Drosophila melanogaster)
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S5aRB [auth AF]189Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7SB [auth CF]226Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4TB [auth AE]261Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6UB [auth AG]231Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7VB [auth AH]194Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8WB [auth AI]207Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16XB [auth AQ]148Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13aYB [auth CO]205Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13ZB [auth CL]210Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23AC [auth CV]134Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14BC [auth CM]159Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
Probable 60S ribosomal protein L37-BEC [auth Cj]87Drosophila melanogasterMutation(s): 0 
UniProt