6XU6

Drosophila melanogaster Testis 80S ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.

Hopes, T.Norris, K.Agapiou, M.McCarthy, C.G.P.Lewis, P.A.O'Connell, M.J.Fontana, J.Aspden, J.L.

(2022) Nucleic Acids Res 50: 2240-2257

  • DOI: https://doi.org/10.1093/nar/gkab606
  • Primary Citation of Related Structures:  
    6XU6, 6XU7, 6XU8

  • PubMed Abstract: 

    Ribosomes have long been thought of as homogeneous macromolecular machines, but recent evidence suggests they are heterogeneous and could be specialised to regulate translation. Here, we have characterised ribosomal protein heterogeneity across 4 tissues of Drosophila melanogaster. We find that testes and ovaries contain the most heterogeneous ribosome populations, which occurs through a combination of paralog-enrichment and paralog-switching. We have solved structures of ribosomes purified from in vivo tissues by cryo-EM, revealing differences in precise ribosomal arrangement for testis and ovary 80S ribosomes. Differences in the amino acid composition of paralog pairs and their localisation on the ribosome exterior indicate paralog-switching could alter the ribosome surface, enabling different proteins to regulate translation. One testis-specific paralog-switching pair is also found in humans, suggesting this is a conserved site of ribosome heterogeneity. Overall, this work allows us to propose that mRNA translation might be regulated in the gonads through ribosome heterogeneity, providing a potential means of ribosome specialisation.


  • Organizational Affiliation

    School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein SAA [auth AA]218Drosophila melanogasterMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L8B [auth CA]253Drosophila melanogasterMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aC [auth AB]220Drosophila melanogasterMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L3D [auth CB]414Drosophila melanogasterMutation(s): 0 
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Find proteins for O16797 (Drosophila melanogaster)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2E [auth AC]227Drosophila melanogasterMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L4F [auth CC]392Drosophila melanogasterMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein subunit beta-like proteinG [auth Ag]318Drosophila melanogasterMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S20H [auth AU]102Drosophila melanogasterMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23I [auth AX]143Drosophila melanogasterMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12J [auth AM]119Drosophila melanogasterMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S29K [auth Ad]52Drosophila melanogasterMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13L [auth AN]150Drosophila melanogasterMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11M [auth AL]155Drosophila melanogasterMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17N [auth AR]120Drosophila melanogasterMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
GEO07301p1O [auth AP]124Drosophila melanogasterMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21P [auth AV]82Drosophila melanogasterMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24Q [auth AY]126Drosophila melanogasterMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25R [auth AZ]74Drosophila melanogasterMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26S [auth Aa]107Drosophila melanogasterMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27T [auth Ab]84Drosophila melanogasterMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3U [auth AD]227Drosophila melanogasterMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30V [auth Ae]58Drosophila melanogasterMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aW [auth Af]80Drosophila melanogasterMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S9X [auth AJ]181Drosophila melanogasterMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27aY [auth Ca]149Drosophila melanogasterMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L15Z [auth CN]203Drosophila melanogasterMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10AA [auth CI]217Drosophila melanogasterMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L5BA [auth CD]290Drosophila melanogasterMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18CA [auth CQ]187Drosophila melanogasterMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L19DA [auth CR]203Drosophila melanogasterMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18aEA [auth CS]173Drosophila melanogasterMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
RE62581pFA [auth CT]158Drosophila melanogasterMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L17GA [auth CP]185Drosophila melanogasterMutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
IP17216pHA [auth CX]120Drosophila melanogasterMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
GEO07453p1IA [auth CY]131Drosophila melanogasterMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27JA [auth CZ]134Drosophila melanogasterMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28KA [auth Cr]134Drosophila melanogasterMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
FI02809pLA [auth Ch]123Drosophila melanogasterMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29MA [auth Cb]75Drosophila melanogasterMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
RE25263pNA [auth Cc]100Drosophila melanogasterMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L32OA [auth Ce]132Drosophila melanogasterMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
GEO07455p1PA [auth Cf]157Drosophila melanogasterMutation(s): 0 
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MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36QA [auth Ci]113Drosophila melanogasterMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38RA [auth Ck]70Drosophila melanogasterMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39SA [auth Cl]50Drosophila melanogasterMutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40TA [auth Cm]52Drosophila melanogasterMutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41UA [auth Cn]25Drosophila melanogasterMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aVA [auth Cp]91Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
TA01007pWA [auth Co]104Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for C5WLN8 (Drosophila melanogaster)
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11XA [auth CJ]182Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P46222 (Drosophila melanogaster)
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9YA [auth CH]190Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P50882 (Drosophila melanogaster)
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L6, isoform AZA [auth CE]228Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9V9W2 (Drosophila melanogaster)
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aAB [auth CG]241Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10a-2EB [auth Cz]217Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VTP4 (Drosophila melanogaster)
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4HB [auth AE]261Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P41042 (Drosophila melanogaster)
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6IB [auth AG]231Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P29327 (Drosophila melanogaster)
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7JB [auth AH]194Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VA91 (Drosophila melanogaster)
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8KB [auth AI]207Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16LB [auth AQ]148Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13aMB [auth CO]205Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13NB [auth CL]210Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23OB [auth CV]134Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14PB [auth CM]159Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
LP04564pQB [auth DA]370Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VQI5 (Drosophila melanogaster)
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10bRB [auth AK]90Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19aSB [auth AT]143Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P39018 (Drosophila melanogaster)
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S5aTB [auth AF]189Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q24186 (Drosophila melanogaster)
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14aUB [auth AO]127Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for C0HKA0 (Drosophila melanogaster)
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28VB [auth Ac]62Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15AaWB [auth AW]129Drosophila melanogasterMutation(s): 0 
UniProt
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L24XB [auth CW]58Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VJY6 (Drosophila melanogaster)
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
RH48056pYB [auth Cg]103Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VHE5 (Drosophila melanogaster)
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L22-like proteinZB [auth CU]96Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for E2JE76 (Drosophila melanogaster)
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Probable 60S ribosomal protein L37-BAC [auth Cj]87Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9W1U6 (Drosophila melanogaster)
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7BC [auth CF]223Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for P32100 (Drosophila melanogaster)
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