6WOO

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

An active role of the eukaryotic large ribosomal subunit in translation initiation fidelity.

Wang, J.Wang, J.Puglisi, J.Fernandez, I.S.

To be published.

Macromolecules

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Entity ID: 4
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uL2 A249Saccharomyces cerevisiaeMutation(s): 0 
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uL3 B384Saccharomyces cerevisiaeMutation(s): 0 
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uL4 C359Saccharomyces cerevisiaeMutation(s): 0 
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uL18 D295Saccharomyces cerevisiaeMutation(s): 0 
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eL6 E175Saccharomyces cerevisiaeMutation(s): 0 
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uL30 F222Saccharomyces cerevisiaeMutation(s): 0 
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eL8 G233Saccharomyces cerevisiaeMutation(s): 0 
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uL6 H191Saccharomyces cerevisiaeMutation(s): 0 
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uL16 I216Saccharomyces cerevisiaeMutation(s): 0 
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uL5 J168Saccharomyces cerevisiaeMutation(s): 0 
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eL13 L198Saccharomyces cerevisiaeMutation(s): 0 
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eL14 M136Saccharomyces cerevisiaeMutation(s): 0 
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eL15 N202Saccharomyces cerevisiaeMutation(s): 0 
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uL13 O197Saccharomyces cerevisiaeMutation(s): 0 
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uL22 P180Saccharomyces cerevisiaeMutation(s): 0 
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eL18 Q184Saccharomyces cerevisiaeMutation(s): 0 
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eL19 R188Saccharomyces cerevisiaeMutation(s): 0 
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eL20 S169Saccharomyces cerevisiaeMutation(s): 0 
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eL21 T158Saccharomyces cerevisiaeMutation(s): 0 
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eL22 U100Saccharomyces cerevisiaeMutation(s): 0 
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uL14 V132Saccharomyces cerevisiaeMutation(s): 0 
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eL24 W62Saccharomyces cerevisiaeMutation(s): 0 
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uL23 X121Saccharomyces cerevisiaeMutation(s): 0 
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uL24 Y125Saccharomyces cerevisiaeMutation(s): 0 
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eL27 Z134Saccharomyces cerevisiaeMutation(s): 0 
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uL15 a147Saccharomyces cerevisiaeMutation(s): 0 
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eL29 b57Saccharomyces cerevisiaeMutation(s): 0 
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eL30 c97Saccharomyces cerevisiaeMutation(s): 0 
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eL31 d106Saccharomyces cerevisiaeMutation(s): 0 
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eL32 e122Saccharomyces cerevisiaeMutation(s): 0 
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eL33 f105Saccharomyces cerevisiaeMutation(s): 0 
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eL34 g121Saccharomyces cerevisiaeMutation(s): 0 
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uL29 h116Saccharomyces cerevisiaeMutation(s): 0 
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eL36 i98Saccharomyces cerevisiaeMutation(s): 0 
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eL37 j85Saccharomyces cerevisiaeMutation(s): 0 
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eL38 k76Saccharomyces cerevisiaeMutation(s): 0 
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eL39 l49Saccharomyces cerevisiaeMutation(s): 0 
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eL40 m51Saccharomyces cerevisiaeMutation(s): 0 
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eL41 n23Saccharomyces cerevisiaeMutation(s): 0 
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eL42 o101Saccharomyces cerevisiaeMutation(s): 0 
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eL43 p87Saccharomyces cerevisiaeMutation(s): 0 
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uL1 q217Saccharomyces cerevisiaeMutation(s): 0 
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uL10 r195Saccharomyces cerevisiaeMutation(s): 0 
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L10 K152Saccharomyces cerevisiaeMutation(s): 0 
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uS2 AA206Saccharomyces cerevisiaeMutation(s): 0 
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eS1 BB214Saccharomyces cerevisiaeMutation(s): 0 
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uS5 CC217Saccharomyces cerevisiaeMutation(s): 0 
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uS3 DD223Saccharomyces cerevisiaeMutation(s): 0 
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eS4 EE257Saccharomyces cerevisiaeMutation(s): 0 
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uS7 FF206Saccharomyces cerevisiaeMutation(s): 0 
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eS6 GG226Saccharomyces cerevisiaeMutation(s): 0 
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eS7 HH184Saccharomyces cerevisiaeMutation(s): 0 
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eS8 II199Saccharomyces cerevisiaeMutation(s): 0 
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uS4 JJ182Saccharomyces cerevisiaeMutation(s): 0 
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eS10 KK96Saccharomyces cerevisiaeMutation(s): 0 
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uS17 LL145Saccharomyces cerevisiaeMutation(s): 0 
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eS12 MM124Saccharomyces cerevisiaeMutation(s): 0 
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uS15 NN150Saccharomyces cerevisiaeMutation(s): 0 
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uS11 OO127Saccharomyces cerevisiaeMutation(s): 0 
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uS19 PP103Saccharomyces cerevisiaeMutation(s): 0 
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uS19 QQ141Saccharomyces cerevisiaeMutation(s): 0 
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eS17 RR123Saccharomyces cerevisiaeMutation(s): 0 
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uS13 SS136Saccharomyces cerevisiaeMutation(s): 0 
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eS19 TT143Saccharomyces cerevisiaeMutation(s): 0 
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uS10 UU106Saccharomyces cerevisiaeMutation(s): 0 
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eS21 VV87Saccharomyces cerevisiaeMutation(s): 0 
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uS8 WW129Saccharomyces cerevisiaeMutation(s): 0 
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uS12 XX144Saccharomyces cerevisiaeMutation(s): 0 
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eS24 YY134Saccharomyces cerevisiaeMutation(s): 0 
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eS25 ZZ70Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 74
MoleculeChainsSequence LengthOrganismDetailsImage
eS26 aa97Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 75
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eS27 bb81Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 76
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eS28 cc63Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 77
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uS14 dd53Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 78
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eS30 ee53Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 79
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eS31 ff57Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 80
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RACK1 gg318Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 82
MoleculeChainsSequence LengthOrganismDetailsImage
eIF5B 1600Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: FUN12YAL035W
EC: 3.6.5.3
Find proteins for P39730 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 1
MoleculeChainsLengthOrganismImage
25S ribosomal RNA53271Saccharomyces cerevisiae
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Entity ID: 2
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5S ribosomal RNA7121Saccharomyces cerevisiae
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Entity ID: 3
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5.8S ribosomal rRNA8157Saccharomyces cerevisiae
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Entity ID: 81
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18S ribosomal RNA21796Saccharomyces cerevisiae
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Entity ID: 83
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Met-tRNA-iMet376Saccharomyces cerevisiae
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  • Entity ID: 84
    MoleculeChainsLengthOrganismImage
    mRNA46Saccharomyces cerevisiae
    Experimental Data & Validation

    Experimental Data

    • Method: ELECTRON MICROSCOPY
    • Resolution: 2.90 Å
    • Aggregation State: PARTICLE 
    • Reconstruction Method: SINGLE PARTICLE 

    Structure Validation

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    Entry History 

    Deposition Data

    Revision History  (Full details and data files)

    • Version 1.0: 2020-09-23
      Type: Initial release