6W2X
CryoEM Structure of Inactive GABAB Heterodimer
- PDB DOI: https://doi.org/10.2210/pdb6W2X/pdb
- EM Map EMD-21533: EMDB EMDataResource
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No 
- Membrane Protein: Yes  OPMPDBTMMemProtMDmpstruc
- Deposited: 2020-03-08 Released: 2020-07-01 
- Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.60 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-aminobutyric acid type B receptor subunit 1 | 829 | Homo sapiens | Mutation(s): 0  Gene Names: GABBR1, GPRC3A Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UBS5 (Homo sapiens) Explore Q9UBS5  Go to UniProtKB:  Q9UBS5 | |||||
PHAROS:  Q9UBS5 GTEx:  ENSG00000204681  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UBS5 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-aminobutyric acid type B receptor subunit 2 | 908 | Homo sapiens | Mutation(s): 0  Gene Names: GABBR2, GPR51, GPRC3B Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O75899 (Homo sapiens) Explore O75899  Go to UniProtKB:  O75899 | |||||
PHAROS:  O75899 GTEx:  ENSG00000136928  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O75899 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
L9Q Query on L9Q | G [auth A], J [auth B] | (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate C41 H80 N O8 P JQKOHRZNEOQNJE-VYCVAHKRSA-N | |||
SGG Query on SGG | H [auth A] | [(2~{S})-3-[[(1~{S})-1-(3,4-dichlorophenyl)ethyl]amino]-2-oxidanyl-propyl]-(phenylmethyl)phosphinic acid C18 H22 Cl2 N O3 P ZODSPDOOCZZEIM-BBRMVZONSA-N | |||
NAG Query on NAG | E [auth A], F [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
MG Query on MG | I [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.60 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | RELION | 3.1 |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-07-01  Deposition Author(s): Papasergi-Scott, M.M., Robertson, M.J., Skiniotis, G.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) | United States | 1R01NS092695-01 |
Revision History (Full details and data files)
- Version 1.0: 2020-07-01
Type: Initial release - Version 1.1: 2020-07-08
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2020-08-26
Changes: Database references, Structure summary