Download MendeleyL-asparaginase from Escherichia coli: Novel insights about the behavior of flexible part of the active site
Souza, T.A.C.B., Morais, S.B., Morini, F.S., Meissner, G.O.To be published.
6V5F
L-asparaginase from Escherichia coli
- PDB DOI: https://doi.org/10.2210/pdb6V5F/pdb
- Classification: HYDROLASE
- Organism(s): Escherichia coli
- Mutation(s): No
- Deposited: 2019-12-04 Released: 2021-02-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.298
- R-Value Work: 0.230
- R-Value Observed: 0.233
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| L-asparaginase 2 | 326 | Escherichia coli | Mutation(s): 0 EC: 3.5.1.1 |  | |
UniProt | |||||
Find proteins for P00805 (Escherichia coli (strain K12)) Explore P00805 Go to UniProtKB: P00805 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00805 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ASP (Subject of Investigation/LOI) Query on ASP | E [auth A], H [auth D] | ASPARTIC ACID C4 H7 N O4 CKLJMWTZIZZHCS-REOHCLBHSA-N |  | ||
| SIN (Subject of Investigation/LOI) Query on SIN | F [auth B], G [auth C] | SUCCINIC ACID C4 H6 O4 KDYFGRWQOYBRFD-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.298
- R-Value Work: 0.230
- R-Value Observed: 0.233
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.917 | α = 90 |
| b = 125.435 | β = 106.94 |
| c = 68.816 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
| XDS | data scaling |
Entry History
Deposition Data
- Released Date: 2021-02-03 Deposition Author(s): Souza, T.A.C.B., Morais, S.B., Morini, F.S., Meissner, G.O.
Revision History (Full details and data files)
- Version 1.0: 2021-02-03
Type: Initial release - Version 1.1: 2023-10-11
Changes: Advisory, Data collection, Database references, Refinement description
