Download Mendeley"Catch and Release": a Variation of the Archetypal NucleotidylTransfer Reaction
Selvaraj, B., Kocaman, S., Trifas, M., Serpersu, E.H., Cuneo, M.J.(2020) ACS Catal 10: 3548-3555
6UN8
Wild type ANT bound to neomycin
- PDB DOI: https://doi.org/10.2210/pdb6UN8/pdb
- Classification: TRANSFERASE/ANTIBIOTIC
- Organism(s): Staphylococcus aureus
- Expression System: Escherichia coli K-12
- Mutation(s): No
- Deposited: 2019-10-11 Released: 2020-05-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.198
- R-Value Work: 0.174
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
Currently 6UN8 does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aminoglycoside NucleotidylTransferase | 253 | Staphylococcus aureus | Mutation(s): 0 Gene Names: knt, kan EC: 2.7.7 |  | |
UniProt | |||||
Find proteins for P05057 (Staphylococcus aureus) Explore P05057 Go to UniProtKB: P05057 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05057 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NMY (Subject of Investigation/LOI) Query on NMY | C [auth A], E [auth B] | NEOMYCIN C23 H46 N6 O13 PGBHMTALBVVCIT-VCIWKGPPSA-N |  | ||
| MG Query on MG | D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.198
- R-Value Work: 0.174
- R-Value Observed: 0.174
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.661 | α = 90 |
| b = 97.794 | β = 90 |
| c = 102.231 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Structure Validation
Currently 6UN8 does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2020-05-06 Deposition Author(s): Cuneo, M.J., Selvaraj, B.
Revision History (Full details and data files)
- Version 1.0: 2020-05-06
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description
