Crystal Structure of S-adenosyl-L-homocysteine hydrolase from Acanthamoeba castellanii with bound NAD and Adenosine
Romanaggi, C.T., Dranow, D.M., Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Adenosylhomocysteinase | 485 | Acanthamoeba castellanii str. Neff | Mutation(s): 0  Gene Names: ACA1_054200 EC: 3.3.1.1 (PDB Primary Data), 3.13.2.1 (UniProt) | ![]() | |
UniProt | |||||
Find proteins for L8H6B5 (Acanthamoeba castellanii (strain ATCC 30010 / Neff)) Explore L8H6B5  Go to UniProtKB:  L8H6B5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | L8H6B5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAD (Subject of Investigation/LOI) Query on NAD | E [auth A], J [auth B], R [auth C], X [auth D] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N | |||
ADN (Subject of Investigation/LOI) Query on ADN | F [auth A], K [auth B], S [auth C], Y [auth D] | ADENOSINE C10 H13 N5 O4 OIRDTQYFTABQOQ-KQYNXXCUSA-N | |||
OXM Query on OXM | I [auth A] | OXAMIC ACID C2 H3 N O3 SOWBFZRMHSNYGE-UHFFFAOYSA-N | |||
ACT Query on ACT | AA [auth D], DA [auth D], L [auth B], M [auth B], U [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
FMT Query on FMT | BA [auth D] CA [auth D] G [auth A] N [auth B] O [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N | |||
K Query on K | EA [auth D], H [auth A], P [auth B], W [auth C] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 96.03 | α = 90 |
b = 112.73 | β = 114.725 |
c = 105.92 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
ARP/wARP | model building |