Macromolecule Content

Total Structure Weight: 55.58 kDa
Atom Count: 4280
Residue Count: 489
Unique protein chains: 1

6UJK

Crystal Structure of a Probable short-chain type dehydrogenase/reductase (Rv1144) from Mycobacterium tuberculosis with bound NAD

DOI: 10.2210/pdb6UJK/pdb

Classification: OXIDOREDUCTASE
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-10-03 Released: 2019-10-16
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.137
R-Value Work: 0.122
R-Value Observed: 0.122

wwPDB Validation 3D Report Full Report

Literature

Crystal Structure of a Probable short-chain type dehydrogenase/reductase (Rv1144) from Mycobacterium tuberculosis with bound NAD

Dranow, D.M., Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized oxidoreductase Rv1144	A, B	258	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: Rv1144 EC: 1
Find proteins for P9WGQ7 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WGQ7 Go to UniProtKB: P9WGQ7
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAD Query on NAD Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain H [B] MOL2 format, chain C [A] MOL2 format, chain H [B]	A, B	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₁ H₂₇ N₇ O₁₄ P₂ BAWFJGJZGIEFAR-NNYOXOHSSA-N		Ligand Interaction
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain G [A] MOL2 format, chain G [A]	A	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Ligand Interaction
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain D [A] SDF format, chain E [A] SDF format, chain F [A] SDF format, chain I [B] SDF format, chain J [B] SDF format, chain K [B] SDF format, chain L [B] MOL2 format, chain D [A] MOL2 format, chain E [A] MOL2 format, chain F [A] MOL2 format, chain I [B] MOL2 format, chain J [B] MOL2 format, chain K [B] MOL2 format, chain L [B]	A, B	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.137
R-Value Work: 0.122
R-Value Observed: 0.122
Space Group: C 2 2 2₁
Diffraction Data DOI: 10.18430/m36ujk Protein Diffraction

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.88	α = 90
b = 124.07	β = 90
c = 95.62	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MoRDa	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2019-10-03
Released Date: 2019-10-16

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History

Version 1.0: 2019-10-16
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.