6U95

Adeno-associated virus strain AAVhu.37 capsid icosahedral structure


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.56 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of the AAVhu.37 capsid by cryoelectron microscopy.

Kaelber, J.T.Yost, S.A.Webber, K.A.Firlar, E.Liu, Y.Danos, O.Mercer, A.C.

(2020) Acta Crystallogr F Struct Biol Commun 76: 58-64

  • DOI: https://doi.org/10.1107/S2053230X20000308
  • Primary Citation of Related Structures:  
    6U95

  • PubMed Abstract: 

    Adeno-associated viruses (AAVs) are used as in vivo gene-delivery vectors in gene-therapy products and have been heavily investigated for numerous indications. Over 100 naturally occurring AAV serotypes and variants have been isolated from primate samples. Many reports have described unique properties of these variants (for instance, differences in potency, target cell or evasion of the immune response), despite high amino-acid sequence conservation. AAVhu.37 is of interest for clinical applications owing to its proficient transduction of the liver and central nervous system. The sequence identity of the AAVhu.37 VP1 to the well characterized AAVrh.10 serotype, for which no structure is available, is greater than 98%. Here, the structure of the AAVhu.37 capsid at 2.56 Å resolution obtained via single-particle cryo-electron microscopy is presented.


  • Organizational Affiliation

    Institute of Quantitative Biomedicine and Rutgers New Jersey CryoEM/CryoET Core Facility, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP1737Adeno-associated virusMutation(s): 0 
Gene Names: cap
UniProt
Find proteins for Q6JC19 (Adeno-associated virus)
Explore Q6JC19 
Go to UniProtKB:  Q6JC19
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6JC19
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.56 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC2.9.0
MODEL REFINEMENTPHENIXdev-3366

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-18
    Type: Initial release
  • Version 1.1: 2020-02-19
    Changes: Database references
  • Version 1.2: 2021-02-03
    Changes: Database references
  • Version 1.3: 2024-03-20
    Changes: Data collection, Database references, Derived calculations, Refinement description