6U42

Natively decorated ciliary doublet microtubule


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the Decorated Ciliary Doublet Microtubule.

Ma, M.Stoyanova, M.Rademacher, G.Dutcher, S.K.Brown, A.Zhang, R.

(2019) Cell 179: 909-922.e12

  • DOI: 10.1016/j.cell.2019.09.030
  • Primary Citation of Related Structures:  
    6U42

  • PubMed Abstract: 
  • The axoneme of motile cilia is the largest macromolecular machine of eukaryotic cells. In humans, impaired axoneme function causes a range of ciliopathies. Axoneme assembly, structure, and motility require a radially arranged set of doublet microtubules, each decorated in repeating patterns with non-tubulin components ...

    The axoneme of motile cilia is the largest macromolecular machine of eukaryotic cells. In humans, impaired axoneme function causes a range of ciliopathies. Axoneme assembly, structure, and motility require a radially arranged set of doublet microtubules, each decorated in repeating patterns with non-tubulin components. We use single-particle cryo-electron microscopy to visualize and build an atomic model of the repeating structure of a native axonemal doublet microtubule, which reveals the identities, positions, repeat lengths, and interactions of 38 associated proteins, including 33 microtubule inner proteins (MIPs). The structure demonstrates how these proteins establish the unique architecture of doublet microtubules, maintain coherent periodicities along the axoneme, and stabilize the microtubules against the repeated mechanical stress induced by ciliary motility. Our work elucidates the architectural principles that underpin the assembly of this large, repetitive eukaryotic structure and provides a molecular basis for understanding the etiology of human ciliopathies.


    Organizational Affiliation

    Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, School of Medicine, St. Louis, MO, USA. Electronic address: zhangrui@wustl.edu.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Tubulin beta
PI [auth 0A], RI [auth 0C], SI [auth 0E], UI [auth 0G], WI [auth 0I], YI [auth 0K], AJ [auth 0M], CJ [auth 0O], EJ [auth 0Q], GJ [auth 0S], HJ [auth 0U], JJ [auth 0W], LJ [auth 0Y], A [auth 1], NJ [auth 1A], PJ [auth 1C], RJ [auth 1E], TJ [auth 1G], VJ [auth 1K], XJ [auth 1M], ZJ [auth 1O], BK [auth 1Q], DK [auth 1S], FK [auth 1U], HK [auth 1W], KK [auth 2A], MK [auth 2C], OK [auth 2E], QK [auth 2G], SK [auth 2I], UK [auth 2K], WK [auth 2M], ZK [auth 2Q], BL [auth 2S], DL [auth 2U], FL [auth 2W], HL [auth 2Y], C [auth 3], JL [auth 3A], LL [auth 3C], OL [auth 3G], QL [auth 3I], SL [auth 3K], UL [auth 3M], WL [auth 3O], YL [auth 3Q], AM [auth 3S], E [auth 5], G [auth 7], I [auth 9], K [auth A1], M [auth A3], O [auth A5], P [auth A7], R [auth A9], T [auth B1], V [auth B3], X [auth B5], Z [auth B8], BA [auth C0], DA [auth C2], EA [auth C4], GA [auth C6], IA [auth C8], KA [auth D0], MA [auth D2], OA [auth D4], QA [auth D6], SA [auth D8], TA [auth E0], VA [auth E2], XA [auth E4], ZA [auth E6], BB [auth E8], DB [auth F0], FB [auth F2], IB [auth F6], KB [auth F8], MB [auth G0], OB [auth G2], QB [auth G4], SB [auth G6], UB [auth G8], XB [auth H2], ZB [auth H4], BC [auth H6], DC [auth H8], FC [auth I0], HC [auth I2], JC [auth I4], MC [auth I8], OC [auth J0], QC [auth J2], SC [auth J4], UC [auth J6], WC [auth J8], YC [auth K0], BD [auth K4], DD [auth K6], FD [auth K8], HD [auth L0], JD [auth L2], LD [auth L4], ND [auth L6], QD [auth M0], SD [auth M2], UD [auth M4], WD [auth M6], YD [auth M8], AE [auth N0], CE [auth N2], FE [auth N6], HE [auth N8], JE [auth O0], LE [auth O2], NE [auth O4], PE [auth O6], RE [auth O8], UE [auth P4], WE [auth P6], YE [auth P8], AF [auth Q0], CF [auth Q2], EF [auth Q4], GF [auth Q6], HF [auth Q8], JF [auth R0], LF [auth R2], NF [auth R4], PF [auth R6], RF [auth R8], TF [auth S0], VF [auth S2], WF [auth S4], YF [auth S6], AG [auth S8], CG [auth T0], EG [auth T2], GG [auth T4], IG [auth T6], KG [auth T8], MG [auth U2], OG [auth U4], QG [auth U6], SG [auth U8], UG [auth V0], WG [auth V2], YG [auth V4], ZG [auth V6], BH [auth V8], DH [auth W0], FH [auth W2], HH [auth W4], JH [auth W6], LH [auth W8], NH [auth X0], OH [auth X2], QH [auth X4], SH [auth X6], UH [auth X8], WH [auth Y0], YH [auth Y2], AI [auth Y4], CI [auth Y6], DI [auth Y8], FI [auth Z0], HI [auth Z2], JI [auth Z4], LI [auth Z6], NI [auth Z8]
443Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: TUBB1TUBB2
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Tubulin alpha
QI [auth 0B], TI [auth 0F], VI [auth 0H], XI [auth 0J], ZI [auth 0L], BJ [auth 0N], DJ [auth 0P], FJ [auth 0R], IJ [auth 0V], KJ [auth 0X], MJ [auth 0Z], OJ [auth 1B], QJ [auth 1D], SJ [auth 1F], UJ [auth 1H], WJ [auth 1L], YJ [auth 1N], AK [auth 1P], CK [auth 1R], EK [auth 1T], GK [auth 1V], IK [auth 1X], JK [auth 1Z], B [auth 2], LK [auth 2B], NK [auth 2D], PK [auth 2F], RK [auth 2H], TK [auth 2J], VK [auth 2L], XK [auth 2N], YK [auth 2P], AL [auth 2R], CL [auth 2T], EL [auth 2V], GL [auth 2X], IL [auth 2Z], KL [auth 3B], ML [auth 3D], NL [auth 3F], PL [auth 3H], RL [auth 3J], TL [auth 3L], VL [auth 3N], XL [auth 3P], ZL [auth 3R], BM [auth 3T], D [auth 4], F [auth 6], H [auth 8], J [auth A0], L [auth A2], N [auth A4], Q [auth A8], S [auth B0], U [auth B2], W [auth B4], Y [auth B7], AA [auth B9], CA [auth C1], FA [auth C5], HA [auth C7], JA [auth C9], LA [auth D1], NA [auth D3], PA [auth D5], RA [auth D7], UA [auth E1], WA [auth E3], YA [auth E5], AB [auth E7], CB [auth E9], EB [auth F1], GB [auth F3], HB [auth F5], JB [auth F7], LB [auth F9], NB [auth G1], PB [auth G3], RB [auth G5], TB [auth G7], VB [auth G9], WB [auth H1], YB [auth H3], AC [auth H5], CC [auth H7], EC [auth H9], GC [auth I1], IC [auth I3], KC [auth I5], LC [auth I7], NC [auth I9], PC [auth J1], RC [auth J3], TC [auth J5], VC [auth J7], XC [auth J9], ZC [auth K1], AD [auth K3], CD [auth K5], ED [auth K7], GD [auth K9], ID [auth L1], KD [auth L3], MD [auth L5], OD [auth L7], PD [auth L9], RD [auth M1], TD [auth M3], VD [auth M5], XD [auth M7], ZD [auth M9], BE [auth N1], DE [auth N3], EE [auth N5], GE [auth N7], IE [auth N9], KE [auth O1], ME [auth O3], OE [auth O5], QE [auth O7], SE [auth O9], TE [auth P3], VE [auth P5], XE [auth P7], ZE [auth P9], BF [auth Q1], DF [auth Q3], FF [auth Q5], IF [auth Q9], KF [auth R1], MF [auth R3], OF [auth R5], QF [auth R7], SF [auth R9], UF [auth S1], XF [auth S5], ZF [auth S7], BG [auth S9], DG [auth T1], FG [auth T3], HG [auth T5], JG [auth T7], LG [auth U1], NG [auth U3], PG [auth U5], RG [auth U7], TG [auth U9], VG [auth V1], XG [auth V3], AH [auth V7], CH [auth V9], EH [auth W1], GH [auth W3], IH [auth W5], KH [auth W7], MH [auth W9], PH [auth X3], RH [auth X5], TH [auth X7], VH [auth X9], XH [auth Y1], ZH [auth Y3], BI [auth Y5], EI [auth Y9], GI [auth Z1], II [auth Z3], KI [auth Z5], MI [auth Z7], OI [auth Z9]
451Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: TUBA1
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
PACRGCM [auth 3V], EM [auth 3X], GM [auth 3Z], IM [auth 4B], KM [auth 4D], MM [auth 4F], OM [auth 4H], QM [auth 4J]307Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: PACRGCHLRE_02g113400v5
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
FAP20DM [auth 3W], FM [auth 3Y], HM [auth 4A], JM [auth 4C], LM [auth 4E], NM [auth 4G], PM [auth 4I]190Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CFAP20BUG22FAP20CHLREDRAFT_189631
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
FAP53RM [auth 4L], SM [auth 4M]482Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CFAP53FAP53CHLREDRAFT_196792
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
FAP127TM [auth 4N], UM [auth 4O], VM [auth 4P]505Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_17g737100v5
Find proteins for A0A2K3CRG7 (Chlamydomonas reinhardtii)
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
RIB43aWM [auth 4Q], XM [auth 4R], YM [auth 4S], ZM [auth 4T], AN [auth 4U]367Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: RIB43aCHLREDRAFT_77703
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
FAP112BN [auth 4V], CN [auth 4W], DN [auth 4X]475Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP112CHLRE_02g145850v5CHLREDRAFT_174030
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
FAP210EN [auth 4Y], FN [auth 4Z]462Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_02g078550v5
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
FAP45GN [auth 5A], HN [auth 5B], IN [auth 5C], JN [auth 5D]501Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CFAP45FAP45CHLREDRAFT_206096
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
RIB30KN [auth 5E]274Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_01g017650v5
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
FAP363LN [auth 5F], MN [auth 5G], GP [auth 7B]391Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_12g545850v5CHLREDRAFT_190810
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
FAP126NN [auth 5H], ON [auth 5I], PN [auth 5J], QN [auth 5K]137Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CFAP126FAP126FLTPCHLREDRAFT_190291
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
FAP52RN [auth 5L], SN [auth 5M], TN [auth 5N]633Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_12g489750v5
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
FAP67UN [auth 5O], VN [auth 5P]380Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP67CHLRE_12g558700v5CHLREDRAFT_180221
EC: 2.7.4.6
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
FAP85WN [auth 5Q]197Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP85CHLRE_06g283100v5CHLREDRAFT_191679
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
FAP106XN [auth 5R], YN [auth 5S], ZN [auth 5T], AO [auth 5U], BO [auth 5V]240Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP106CHLRE_09g393954v5CHLREDRAFT_137793
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
FAP115CO [auth 5X], DO [auth 5Y], EO [auth 5Z], FO [auth 6A], GO [auth 6B], HO [auth 6C], IO [auth 6D]230Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP115CHLRE_02g142126v5CHLREDRAFT_194105
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
FAP143JO [auth 6E]268Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_02g095149v5
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
FAP161KO [auth 6F]403Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP161CHLRE_13g564400v5CHLREDRAFT_156094
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
FAP166LO [auth 6G], MO [auth 6H]214Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_03g200700v5
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
FAP252NO [auth 6I], OO [auth 6J], PO [auth 6K], QO [auth 6L], RO [auth 6M], SO [auth 6N], TO [auth 6O], UO [auth 6P]352Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP252CHLRE_10g466650v5CHLREDRAFT_187818
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
FAP276VO [auth 6Q], WO [auth 6R], XO [auth 6S]87Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_04g216203v5CHLRE_04g216250v5
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
RIB72YO [auth 6T], ZO [auth 6U], AP [auth 6V], BP [auth 6W], CP [auth 6X], DP [auth 6Y], EP [auth 6Z], FP [auth 7A]635Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: RIB72CHLRE_02g091700v5CHLREDRAFT_126286
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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
FAP141HP [auth 7C]111Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP141CHLREDRAFT_170025
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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
FAP222IP [auth 7D], JP [auth 7E], KP [auth 7F]146Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP222CHLRE_11g467561v5CHLREDRAFT_153689
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Entity ID: 27
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FAP95LP [auth 7G]235Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP95CHLRE_13g573500v5CHLREDRAFT_182707
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
FAP182MP [auth 7H], CQ [auth 7X]471Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP182CHLRE_12g485000v5CHLREDRAFT_195050
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Entity ID: 29
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FAP129NP [auth 7I], OP [auth 7J]483Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_03g199500v5
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Entity ID: 30
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FAP21PP [auth 7K], QP [auth 7L]458Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
FAP273RP [auth 7M], SP [auth 7N]139Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP273CHLRE_03g200950v5CHLREDRAFT_183955
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Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
FAP107TP [auth 7O], UP [auth 7P]238Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP107CHLRE_11g469000v5CHLREDRAFT_178177
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
RIB21VP [auth 7Q]189Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CHLRE_11g467582v5
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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
DC1WP [auth 7R], XP [auth 7S]749Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: ODA3CHLRE_17g703850v5CHLREDRAFT_189083
EC: 2.7.1
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Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
DC2YP [auth 7T], ZP [auth 7U]552Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: ODA1DCC2CHLREDRAFT_132719
Find proteins for A8JF70 (Chlamydomonas reinhardtii)
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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
DC3AQ [auth 7V], BQ [auth 7W]184Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: ODA14CHLRE_14g617550v5CHLREDRAFT_136411
Find proteins for Q7Y0H2 (Chlamydomonas reinhardtii)
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Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
FAP68DQ [auth 7Y]312Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP68CHLRE_01g015850v5CHLREDRAFT_146275
Find proteins for A8HPK6 (Chlamydomonas reinhardtii)
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
FAP90EQ [auth 7Z], FQ [auth 8A], GQ [auth 8B], HQ [auth 8C], IQ [auth 8D]242Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: FAP90CHLRE_10g424250v5CHLREDRAFT_181900
Find proteins for A8ICC1 (Chlamydomonas reinhardtii)
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Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP

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AAA [auth R2] , AHA [auth 1T] , AIA [auth 2L] , AJA [auth 3D] , AZ [auth P4] , BFA [auth 0I] , BU [auth G1] , BY [auth N3] , 
AAA [auth R2],  AHA [auth 1T],  AIA [auth 2L],  AJA [auth 3D],  AZ [auth P4],  BFA [auth 0I],  BU [auth G1],  BY [auth N3],  CBA [auth T2],  CCA [auth V2],  CDA [auth X0],  CEA [auth Z0],  CR [auth A4],  CS [auth C5],  CT [auth E4],  CV [auth I0],  CW [auth J8],  CX [auth L6],  DAA [auth R4],  DGA [auth 1C],  DIA [auth 2N],  DJA [auth 3G],  DY [auth N6],  DZ [auth P6],  EEA [auth Z2],  EFA [auth 0K],  EHA [auth 1W],  EV [auth I1],  EX [auth L7],  FAA [auth R6],  FBA [auth T4],  FCA [auth V3],  FGA [auth 1D],  FT [auth E6],  FU [auth G4],  FW [auth K0],  GDA [auth X4],  GHA [auth 1X],  GIA [auth 2Q],  GJA [auth 3I],  GS [auth C8],  HEA [auth Z3],  HFA [auth 0M],  HR [auth A9],  HU [auth G5],  HW [auth K1],  HX [auth M0],  HY [auth N8],  HZ [auth P8],  IBA [auth T6],  IJA [auth 3K],  IS [auth C9],  IT [auth E8],  IV [auth I4],  JAA [auth R8],  JDA [auth X6],  JGA [auth 1G],  JHA [auth 2A],  JIA [auth 2S],  JR [auth B0],  JY [auth O0],  JZ [auth P9],  KCA [auth V8],  KFA [auth 0O],  KU [auth G7],  KV [auth I5],  KW [auth K4],  KX [auth M2],  LBA [auth T8],  LDA [auth X7],  LEA [auth Z6],  LGA [auth 1H],  LQ [auth 3],  LS [auth D1],  LT [auth F0],  MAA [auth S0],  MHA [auth 2C],  MIA [auth 2U],  MJA [auth 3M],  MR [auth B2],  NCA [auth W0],  NEA [auth Z7],  NFA [auth 0Q],  NQ [auth 4],  NT [auth F1],  NU [auth G9],  NV [auth I8],  NW [auth K6],  NX [auth M4],  NY [auth O2],  NZ [auth Q2],  OBA [auth U2],  OGA [auth 1L],  OS [auth D3],  PAA [auth S2],  PCA [auth W2],  PDA [auth Y0],  PHA [auth 2E],  PIA [auth 2W],  PJA [auth 3O],  PU [auth H2],  PW [auth K7],  QEA [auth 0A],  QFA [auth 0S],  QR [auth B5],  QT [auth F3],  QV [auth J0],  QX [auth M6],  QY [auth O4],  QZ [auth Q4],  RBA [auth U4],  RDA [auth Y1],  RGA [auth 1N],  RJA [auth 3P],  RQ [auth 7],  RS [auth D5],  SAA [auth S5],  SHA [auth 2G],  SIA [auth 2Y],  SR [auth B7],  ST [auth F5],  SU [auth H3],  SW [auth K9],  SX [auth M7],  TCA [auth W4],  TFA [auth 0V],  TQ [auth 8],  TV [auth J2],  TY [auth O6],  TZ [auth Q6],  UBA [auth U6],  UEA [auth 0C],  US [auth D7],  VCA [auth W5],  VDA [auth Y4],  VGA [auth 1Q],  VHA [auth 2I],  VIA [auth 3A],  VJA [auth 3S],  VV [auth J4],  VY [auth O8],  WAA [auth S8],  WBA [auth U7],  WR [auth C0],  WT [auth F8],  WU [auth H6],  WW [auth L2],  WX [auth N0],  XEA [auth 0F],  XFA [auth 0Y],  XJA [auth 3T],  XQ [auth A1],  XZ [auth R0],  YAA [auth S9],  YCA [auth W8],  YDA [auth Y6],  YGA [auth 1S],  YHA [auth 2K],  YIA [auth 3C],  YR [auth C1],  YS [auth E1],  YU [auth H8],  YX [auth N1],  YY [auth O9],  ZBA [auth U9],  ZFA [auth 1A],  ZQ [auth A2],  ZT [auth G0],  ZV [auth J6],  ZW [auth L4]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
 Ligand Interaction
GDP
Query on GDP

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ABA [auth T0] , ADA [auth W8] , AEA [auth Y8] , AS [auth C2] , AT [auth E2] , AU [auth G0] , AV [auth H8] , AW [auth J6] , 
ABA [auth T0],  ADA [auth W8],  AEA [auth Y8],  AS [auth C2],  AT [auth E2],  AU [auth G0],  AV [auth H8],  AW [auth J6],  AX [auth L4],  AY [auth N2],  BAA [auth R2],  BCA [auth V0],  BGA [auth 1A],  BR [auth A3],  BS [auth C4],  CFA [auth 0I],  CHA [auth 1U],  CIA [auth 2M],  CZ [auth P4],  DBA [auth T2],  DDA [auth X0],  DEA [auth Z0],  DT [auth E4],  DU [auth G2],  DV [auth I0],  DW [auth J8],  DX [auth L6],  EAA [auth R4],  ECA [auth V2],  EDA [auth X2],  EGA [auth 1C],  EJA [auth 3G],  ER [auth A5],  ES [auth C6],  FFA [auth 0K],  FHA [auth 1W],  FR [auth A7],  FY [auth N6],  FZ [auth P6],  GBA [auth T4],  GEA [auth Z2],  GT [auth E6],  GU [auth G4],  GV [auth I2],  GW [auth K0],  HAA [auth R6],  HCA [auth V4],  HDA [auth X4],  HGA [auth 1E],  HIA [auth 2Q],  HJA [auth 3I],  HS [auth C8],  ICA [auth V6],  IFA [auth 0M],  IR [auth A9],  IX [auth M0],  IY [auth N8],  IZ [auth P8],  JBA [auth T6],  JEA [auth Z4],  JQ [auth 2],  JT [auth E8],  JU [auth G6],  JV [auth I4],  KAA [auth R8],  KDA [auth X6],  KGA [auth 1G],  KHA [auth 2A],  KIA [auth 2S],  KJA [auth 3K],  KS [auth D0],  LCA [auth V8],  LFA [auth 0O],  LR [auth B1],  LW [auth K4],  LX [auth M2],  LY [auth O0],  LZ [auth Q0],  MBA [auth T8],  MEA [auth Z6],  MQ [auth 3],  MT [auth F0],  MU [auth G8],  NAA [auth S0],  NDA [auth X8],  NGA [auth 1K],  NHA [auth 2C],  NIA [auth 2U],  NJA [auth 3M],  NS [auth D2],  OCA [auth W0],  OFA [auth 0Q],  OR [auth B3],  OV [auth I8],  OW [auth K6],  OX [auth M4],  OY [auth O2],  OZ [auth Q2],  PBA [auth U2],  PEA [auth Z8],  PQ [auth 5],  PT [auth F2],  QAA [auth S2],  QDA [auth Y0],  QGA [auth 1M],  QHA [auth 2E],  QIA [auth 2W],  QJA [auth 3O],  QS [auth D4],  RAA [auth S4],  RCA [auth W2],  RFA [auth 0S],  RR [auth B5],  RU [auth H2],  RV [auth J0],  RW [auth K8],  RX [auth M6],  RY [auth O4],  RZ [auth Q4],  SBA [auth U4],  SEA [auth 0A],  SFA [auth 0U],  SQ [auth 7],  TDA [auth Y2],  TGA [auth 1O],  THA [auth 2G],  TIA [auth 2Y],  TJA [auth 3Q],  TS [auth D6],  UAA [auth S6],  UCA [auth W4],  UR [auth B8],  UT [auth F6],  UU [auth H4],  UV [auth J2],  UW [auth L0],  UX [auth M8],  UY [auth O6],  UZ [auth Q6],  VBA [auth U6],  VEA [auth 0C],  VFA [auth 0W],  VQ [auth 9],  VZ [auth Q8],  WDA [auth Y4],  WEA [auth 0E],  WGA [auth 1Q],  WHA [auth 2I],  WIA [auth 3A],  WJA [auth 3S],  WS [auth D8],  XAA [auth S8],  XCA [auth W6],  XR [auth C0],  XS [auth E0],  XT [auth F8],  XU [auth H6],  XV [auth J4],  XW [auth L2],  XX [auth N0],  XY [auth O8],  YBA [auth U8],  YFA [auth 0Y],  YQ [auth A1],  YZ [auth R0],  ZDA [auth Y6],  ZEA [auth 0G],  ZGA [auth 1S],  ZHA [auth 2K],  ZIA [auth 3C]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

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ACA [auth U9] , AFA [auth 0H] , AGA [auth 1A] , AR [auth A2] , BBA [auth T1] , BDA [auth W9] , BEA [auth Y9] , BHA [auth 1T] , 
ACA [auth U9],  AFA [auth 0H],  AGA [auth 1A],  AR [auth A2],  BBA [auth T1],  BDA [auth W9],  BEA [auth Y9],  BHA [auth 1T],  BIA [auth 2L],  BJA [auth 3D],  BT [auth E3],  BV [auth H9],  BW [auth J7],  BX [auth L5],  BZ [auth P4],  CAA [auth R3],  CGA [auth 1B],  CJA [auth 3F],  CU [auth G1],  CY [auth N3],  DCA [auth V2],  DFA [auth 0J],  DHA [auth 1V],  DR [auth A4],  DS [auth C5],  EBA [auth T3],  EIA [auth 2N],  ET [auth E5],  EU [auth G3],  EW [auth J9],  EY [auth N6],  EZ [auth P6],  FDA [auth X3],  FEA [auth Z2],  FIA [auth 2P],  FJA [auth 3H],  FS [auth C7],  FV [auth I1],  FX [auth L7],  GAA [auth R6],  GCA [auth V3],  GFA [auth 0L],  GGA [auth 1D],  GR [auth A8],  GX [auth L9],  GY [auth N7],  GZ [auth P7],  HBA [auth T5],  HHA [auth 1X],  HT [auth E7],  HV [auth I3],  IAA [auth R7],  IDA [auth X5],  IEA [auth Z3],  IGA [auth 1F],  IHA [auth 1Z],  IIA [auth 2R],  IU [auth G5],  IW [auth K1],  JCA [auth V7],  JFA [auth 0N],  JJA [auth 3K],  JS [auth C9],  JW [auth K3],  JX [auth M1],  KBA [auth T7],  KEA [auth Z5],  KQ [auth 2],  KR [auth B0],  KT [auth E9],  KY [auth O0],  KZ [auth P9],  LAA [auth R9],  LHA [auth 2B],  LIA [auth 2T],  LJA [auth 3L],  LU [auth G7],  LV [auth I5],  MCA [auth V9],  MDA [auth X7],  MFA [auth 0P],  MGA [auth 1H],  MS [auth D1],  MV [auth I7],  MW [auth K5],  MX [auth M3],  MY [auth O1],  MZ [auth Q1],  NBA [auth U1],  NR [auth B2],  OAA [auth S1],  ODA [auth X9],  OEA [auth Z7],  OHA [auth 2D],  OIA [auth 2V],  OJA [auth 3N],  OQ [auth 4],  OT [auth F1],  OU [auth G9],  PFA [auth 0R],  PGA [auth 1L],  PR [auth B4],  PS [auth D3],  PV [auth I9],  PX [auth M5],  PY [auth O3],  PZ [auth Q3],  QBA [auth U3],  QCA [auth W2],  QQ [auth 6],  QU [auth H2],  QW [auth K7],  REA [auth 0A],  RHA [auth 2F],  RIA [auth 2X],  RT [auth F3],  SCA [auth W3],  SDA [auth Y1],  SGA [auth 1N],  SJA [auth 3P],  SS [auth D5],  SV [auth J1],  SY [auth O5],  SZ [auth Q5],  TAA [auth S5],  TBA [auth U5],  TEA [auth 0B],  TR [auth B7],  TT [auth F5],  TU [auth H3],  TW [auth K9],  TX [auth M7],  UDA [auth Y3],  UFA [auth 0W],  UGA [auth 1P],  UHA [auth 2H],  UIA [auth 2Z],  UJA [auth 3R],  UQ [auth 8],  VAA [auth S7],  VR [auth B9],  VS [auth D7],  VT [auth F7],  VU [auth H5],  VW [auth L1],  VX [auth M9],  WCA [auth W5],  WFA [auth 0X],  WQ [auth A0],  WV [auth J4],  WY [auth O8],  WZ [auth Q9],  XBA [auth U7],  XDA [auth Y5],  XGA [auth 1R],  XHA [auth 2J],  XIA [auth 3B],  YEA [auth 0F],  YJA [auth 3T],  YT [auth F9],  YV [auth J5],  YW [auth L3],  ZAA [auth S9],  ZCA [auth W8],  ZR [auth C1],  ZS [auth E1],  ZU [auth H8],  ZX [auth N1],  ZY [auth O9],  ZZ [auth R1]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM032843

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-13
    Type: Initial release
  • Version 1.1: 2020-01-08
    Changes: Author supporting evidence