6U25

CRYSTAL STRUCTURE OF RAR-RELATED ORPHAN RECEPTOR C (NHIS- RORGT(244-487)-L6-SRC1(678-692)) IN COMPLEX WITH A TRICYCLIC INVERSE AGONIST


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.208 

wwPDB Validation   3D Report Full Report

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This is version 1.3 of the entry. See complete history


Literature

Rationally Designed, Conformationally Constrained Inverse Agonists of ROR gamma t-Identification of a Potent, Selective Series with Biologic-Like in Vivo Efficacy.

Marcoux, D.Duan, J.J.Shi, Q.Cherney, R.J.Srivastava, A.S.Cornelius, L.Batt, D.G.Liu, Q.Beaudoin-Bertrand, M.Weigelt, C.A.Khandelwal, P.Vishwakrishnan, S.Selvakumar, K.Karmakar, A.Gupta, A.K.Basha, M.Ramlingam, S.Manjunath, N.Vanteru, S.Karmakar, S.Maddala, N.Vetrichelvan, M.Gupta, A.Rampulla, R.A.Mathur, A.Yip, S.Li, P.Wu, D.R.Khan, J.Ruzanov, M.Sack, J.S.Wang, J.Yarde, M.Cvijic, M.E.Li, S.Shuster, D.J.Borowski, V.Xie, J.H.McIntyre, K.W.Obermeier, M.T.Fura, A.Stefanski, K.Cornelius, G.Hynes Jr., J.Tino, J.A.Macor, J.E.Salter-Cid, L.Denton, R.Zhao, Q.Carter, P.H.Dhar, T.G.M.

(2019) J Med Chem 62: 9931-9946

  • DOI: https://doi.org/10.1021/acs.jmedchem.9b01369
  • Primary Citation of Related Structures:  
    6U25

  • PubMed Abstract: 

    RORγt is an important nuclear receptor that regulates the production of several pro-inflammatory cytokines such as IL-17 and IL-22. As a result, RORγt has been identified as a potential target for the treatment of various immunological disorders such as psoriasis, psoriatic arthritis, and inflammatory bowel diseases. Structure and computer-assisted drug design led to the identification of a novel series of tricyclic RORγt inverse agonists with significantly improved in vitro activity in the reporter (Gal4) and human whole blood assays compared to our previous chemotype. Through careful structure activity relationship, several potent and selective RORγt inverse agonists have been identified. Pharmacokinetic studies allowed the identification of the lead molecule 32 with a low peak-to-trough ratio. This molecule showed excellent activity in an IL-2/IL-23-induced mouse pharmacodynamic study and demonstrated biologic-like efficacy in an IL-23-induced preclinical model of psoriasis.


  • Organizational Affiliation

    Research and Development , Bristol-Myers Squibb , 3551 Lawrenceville Rd , Princeton , New Jersey 08540 , United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NUCLEAR RECEPTOR COACTIVATOR 1 CHIMERA285Homo sapiensMutation(s): 0 
Gene Names: RORCNR1F3RORGRZRGNCOA1BHLHE74SRC1
EC: 2.3.1.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q15788 (Homo sapiens)
Explore Q15788 
Go to UniProtKB:  Q15788
PHAROS:  Q15788
GTEx:  ENSG00000084676 
Find proteins for P51449 (Homo sapiens)
Explore P51449 
Go to UniProtKB:  P51449
PHAROS:  P51449
GTEx:  ENSG00000143365 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ15788P51449
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
O5B (Subject of Investigation/LOI)
Query on O5B

Download Ideal Coordinates CCD File 
B [auth A]trans-4-[(3aR,9bR)-9b-[(4-fluorophenyl)sulfonyl]-7-(1,1,1,2,3,3,3-heptafluoropropan-2-yl)-1,2,3a,4,5,9b-hexahydro-3H-benzo[e]indole-3-carbonyl]cyclohexane-1-carboxylic acid
C29 H27 F8 N O5 S
FEJZVGPREBSBIT-NIULTJEISA-N
GOL
Query on GOL

Download Ideal Coordinates CCD File 
C [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
O5B BindingDB:  6U25 IC50: min: 70, max: 70 (nM) from 2 assay(s)
EC50: min: 7, max: 19 (nM) from 2 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.208 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.656α = 90
b = 61.656β = 90
c = 158.271γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
autoPROCdata scaling

Structure Validation

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Entry History 

Deposition Data

  • Released Date: 2019-11-06 
  • Deposition Author(s): Sack, J.

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-06
    Type: Initial release
  • Version 1.1: 2019-11-13
    Changes: Database references
  • Version 1.2: 2019-11-27
    Changes: Database references
  • Version 1.3: 2023-10-11
    Changes: Data collection, Database references, Refinement description